Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 433 / 5e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 404 / 1e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 401 / 1e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 394 / 2e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 393 / 4e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 392 / 8e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30830 389 / 6e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43450 376 / 1e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022195 [exp] 614 / 0 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 612 / 0 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 570 / 0 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 561 / 0 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 487 / 3e-173 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 476 / 4e-169 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 473 / 1e-167 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 473 / 1e-167 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 471 / 4e-167 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073300 [exp] 456 / 3e-161 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 443 / 4e-156 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 427 / 9e-150 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 396 / 2e-137 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 381 / 1e-131 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 379 / 1e-130 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 338 / 2e-114 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 332 / 3e-112 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 325 / 2e-109 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 314 / 3e-105 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022415 pacid=23171786 polypeptide=Lus10022415 locus=Lus10022415.g ID=Lus10022415.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTTACGATAGGCTGGCTGAATTGAAGGCATTCGACGAAACCAAAGCCGGAGTCAAAGGCCTAGTCGACGCTGGAGTGACTGAGCTCCCTC GTATCTTCAAGGCACCACCTCATCTTCTTCTAGACAACAACAGCAACATTAAGAAATCGCCAACTAATGTCTCTCCCCAAGATCAGGACTTCATTTTCCC AACCATAGACCTGCAAGGTTTGGCGGCCCAAGACCACCCCGAGAAGCGAAAGCAGATTGTTCAGAAAGTGAAAGAAGCATCTTCCAACTGGGGATTTTTC CAGGTGGTTAATCACGGAATTCCACTGAGCGTGTTGGATGAGATGAAGGCCGGGACTCGCAGGTTTCACGAGCAGGATGTCGAGGTGAAGAAGCAATTCT ATACTCGTGACGTTGTTAACACAAAGATCATTTACAACAGCAACTTCGACCTCTACACCGGAGCTTTTACCAACTGGAGGGACACTCTTCTCATTCATAT TGCTCCCGATCCAGCTCCCTCCCCCGATGAATATCCCGCTTGTTGCAGAGAAATACTACTGGAATATTCAAAAGTAGTGGCAAAACTCGGAGACTTGCTT TTCCAACTATTGTCGGAGGCTCTGGGGTTAGATTCGGACCGTCTGAAAAAACTGCAATGCACAAAGGGACTCAACGTGGCATGCCATTACTATCCGGCAT GTCCACAGCCAGAACTGACGATGGGAGCATGCAAGCATGCTGACAATGATTTCATTACGGTGCTTCTTCAAGACCATTGTGGAGGCCTCCAAGTTCTTCA CAAGGACCAATGGGTTGATATCCCTCCCATTCCTGATGCTTTAGTGGTCAACATCGGAGATTTACTCCAGCTGATATCCAACGACAAATTTATAAGTTCA GAGCATAGAGTGATATCACAAAATGTTGGGCCAAGAGTATCTGTTGGATGCTTCTTCAATACTGGGTTTTCAGGGTATCCAATTAATATTGGACCCATCG CGGAGCTGTTATCGGAAAATGAGCCTCCGAAATATAGGCAGACCACGGTGGCCGAGTTTAGTACTCACTTCTTCAGTAAAGGCCTTCATGGCACTTCTGC GTTGCTTCATTTCAAGCTCTGA
AA sequence Show only first row Show all	>Lus10022415 pacid=23171786 polypeptide=Lus10022415 locus=Lus10022415.g ID=Lus10022415.BGIv1.0 annot-version=v1.0 MAAAYDRLAELKAFDETKAGVKGLVDAGVTELPRIFKAPPHLLLDNNSNIKKSPTNVSPQDQDFIFPTIDLQGLAAQDHPEKRKQIVQKVKEASSNWGFF QVVNHGIPLSVLDEMKAGTRRFHEQDVEVKKQFYTRDVVNTKIIYNSNFDLYTGAFTNWRDTLLIHIAPDPAPSPDEYPACCREILLEYSKVVAKLGDLL FQLLSEALGLDSDRLKKLQCTKGLNVACHYYPACPQPELTMGACKHADNDFITVLLQDHCGGLQVLHKDQWVDIPPIPDALVVNIGDLLQLISNDKFISS EHRVISQNVGPRVSVGCFFNTGFSGYPINIGPIAELLSENEPPKYRQTTVAEFSTHFFSKGLHGTSALLHFKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	0	1
AT1G10340			Ankyrin repeat family protein ...		Lus10038609 [exp]	3.3	0.8471
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10026629 [exp]	8.6	0.8191
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	9.2	0.7919
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	9.9	0.7773
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029946 [exp]	11.5	0.7909
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	12.5	0.7695
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	14.5	0.7857
AT2G46150			Late embryogenesis abundant (L...		Lus10017531 [exp]	15.2	0.7742
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	17.0	0.7294
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	19.1	0.7524

Compare expression of checked genes

Lus10022415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.