Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24230 268 / 6e-89 Lipase class 3-related protein (.1) AT2G05260 261 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G10955 257 / 6e-85 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24220 213 / 3e-67 Lipase class 3-related protein (.1) AT5G24180 202 / 4e-63 Lipase class 3-related protein (.1) AT5G24200 172 / 8e-52 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 157 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 127 / 1e-35 Lipase class 3-related protein (.1) AT5G50890 123 / 1e-32 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018097 [exp] 514 / 0 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10003188 [exp] 281 / 2e-94 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001819 [exp] 280 / 6e-94 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023072 [exp] 278 / 5e-93 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031455 [exp] 137 / 6e-38 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10001506 [exp] 133 / 2e-36 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 128 / 2e-34 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10007331 [exp] 123 / 2e-32 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10032396 [exp] 0 / 1 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141100 [exp] 300 / 7e-102 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G090500 [exp] 299 / 4e-101 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G204100 [exp] 140 / 3e-39 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G058100 [exp] 137 / 5e-38 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10022416 pacid=23171701 polypeptide=Lus10022416 locus=Lus10022416.g ID=Lus10022416.BGIv1.0 annot-version=v1.0 ATGCTTGCTTTCGATTATGGCAGGAGCAATACTGATCACAGAAGATCAATCGCAGCGTCTTTAGTTCAAGGAGTGTGTGTTAAAGAGAGGGATCGCCAGA AGAAGAGACAAGGTCCAGAAGCTCAGGCCATCCATTGGTGGACTTTCTTCAATTTCCAACTGGTCAATCTTCTTTTAGACAACAATGACAAGTCGATCTT TGGTGCCATCTTTGAATACAAGTCCATTAAACCAAAAACAAAGGCTGAGACTCCTGGCAAAACCGCCCCAACTTATGTGATTGCTTTCCGAGGCACGTTG AACAAGCCAGACTCTATCTCCAGGGACATTGAGCTCGACCTTCTCTGCATCCGCCACAAACTCCACAAGAGTTCTCGTTTTCGAGTCTCAATGGAGGCAG TCTACGACGTGATTAGCGTAGCTGGCTCTGATAACCTCTGGATAGCTGGCCATTCTTTGGGGTCAGCCATTGCATTGCTTGCAGGAAAGAAGATGGCCAA AGGGGACACTCTCATCGAGACTTACCTTTTCAACCCGCCATTCTTGTCGGCTCCGATCGAGAGAATAAAGAACAAGAAACTGAAGCAAGGTATGCGCTTC ACGAGCGGCGTTTTCAAGGCCGGACTGGTGGCGACCGGAAGCCAGGATCGAAAGACACGAAAAGAAACCGAGTTTGGGGTGTTGTCCACTTGGATGCCTT ACATGTTCTTGAATCCTAACGATCATATCTGTGCTGGGTACATAGGCTACTTTGAACACAGGAGGAGGATGGAAGAGAGAGGTGCTGGGAAGATTGAATA A
AA sequence Show only first row Show all	>Lus10022416 pacid=23171701 polypeptide=Lus10022416 locus=Lus10022416.g ID=Lus10022416.BGIv1.0 annot-version=v1.0 MLAFDYGRSNTDHRRSIAASLVQGVCVKERDRQKKRQGPEAQAIHWWTFFNFQLVNLLLDNNDKSIFGAIFEYKSIKPKTKAETPGKTAPTYVIAFRGTL NKPDSISRDIELDLLCIRHKLHKSSRFRVSMEAVYDVISVAGSDNLWIAGHSLGSAIALLAGKKMAKGDTLIETYLFNPPFLSAPIERIKNKKLKQGMRF TSGVFKAGLVATGSQDRKTRKETEFGVLSTWMPYMFLNPNDHICAGYIGYFEHRRRMEERGAGKIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24230			Lipase class 3-related protein...		Lus10022416 [exp]	0	1
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10030729 [exp]	1.0	0.8584
AT1G29110			Cysteine proteinases superfami...		Lus10018586 [exp]	3.0	0.7537
					Lus10025353 [exp]	3.3	0.7376
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	5.3	0.8225
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	6.5	0.8225
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	6.9	0.8060
AT1G70780			unknown protein		Lus10039287 [exp]	7.5	0.8225
					Lus10027606 [exp]	8.4	0.8070
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	9.9	0.7955
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	10.6	0.7579

Compare expression of checked genes

Lus10022416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.