Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50510 412 / 2e-145 indigoidine synthase A family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009716 [exp] 538 / 0 AT1G50510 419 / 9e-148 indigoidine synthase A family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254000 [exp] 466 / 8e-167 AT1G50510 491 / 5e-176 indigoidine synthase A family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04227 [flax] [poplar] Indigoidine_A Indigoidine synthase A like protein
Representative CDS sequence Show only first row Show all	>Lus10022419 pacid=23171644 polypeptide=Lus10022419 locus=Lus10022419.g ID=Lus10022419.BGIv1.0 annot-version=v1.0 ATGCCATATCCTCAAAATTTGGCGACAGCCAAGGAAGTGGAAGACATAGTGAGAAAGAATGGAGCTGTGCCTGCTACAGTTGCTATTCTAGATGGCGTTC CTTGTGTAGGTTTAAGTGCAGCACAACTGGAGCGACTCGCAACTCTTGGTCCCAGAGCTCAGAAAACAGCTCGGAGGGACATTGCATATGTTGTTGCCAG TAGACGGAATGGCGCCACAACTGTTTCAGCAACCATGTTTTTTGCTTCTATGGTTGGTATCCATGTGTTTGTAACCGGTGGCATTGGAGGTGTACATAGG CATGGAGAGCAAACGATGGATGTATCTTCTGATCTAACTGAGCTTGGAAGAACTCCAGTAGCAGTTATCTCAGCAGGGGTCAAATCAATATTAGATATTC CCAAAACCCTTGAATATTTGGAAACACAAGGAGTTTGTGTCGTTGGTTATAAGACTAATGAGTTTCCTGCATTTTTCACAGATACCAGTGGCTGTAAGGC TCCTTGCCGAATGGACACCCCAGAGGAGTGTGCTCAGCTGATAGATGCTACCACAAAGCTGAAGCTTGGAAATGGGATTCTAATAGGAGTTCCAATCCCG AAGGAACAATCAGCATCTGGAAGTATGATTGAATCTGCAATCCAGAAAGCCCTTAAAGAAGCAAGGGAGAAGAATATAAGTGGAAGTGCTGAAACTCCTT TCTTGCTGGCAAGAGTGAACGAACTAACCGGAGGAGCCTCCTTGTCTGCAAGCATCACGAGATGTGCTGTTAACTTCTTTTCTTACTACTGTTGCTTCCT TAGCCAAGGGATAGACATTGCACTGGTGAAGAATAATGCTCTTGTTGGTGCTAAGATCGCTGTTGCTCTTGCTCACCTCAGAGAGCACTGA
AA sequence Show only first row Show all	>Lus10022419 pacid=23171644 polypeptide=Lus10022419 locus=Lus10022419.g ID=Lus10022419.BGIv1.0 annot-version=v1.0 MPYPQNLATAKEVEDIVRKNGAVPATVAILDGVPCVGLSAAQLERLATLGPRAQKTARRDIAYVVASRRNGATTVSATMFFASMVGIHVFVTGGIGGVHR HGEQTMDVSSDLTELGRTPVAVISAGVKSILDIPKTLEYLETQGVCVVGYKTNEFPAFFTDTSGCKAPCRMDTPEECAQLIDATTKLKLGNGILIGVPIP KEQSASGSMIESAIQKALKEAREKNISGSAETPFLLARVNELTGGASLSASITRCAVNFFSYYCCFLSQGIDIALVKNNALVGAKIAVALAHLREH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50510			indigoidine synthase A family ...		Lus10022419 [exp]	0	1
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	6.0	0.8913
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	6.5	0.8768
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	10.5	0.8675
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	12.7	0.8735
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	13.7	0.8479
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	15.5	0.8519
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	20.9	0.8652
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	24.2	0.8459
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	24.9	0.8721
AT1G03330			Small nuclear ribonucleoprotei...		Lus10000666 [exp]	25.8	0.8341

Compare expression of checked genes

Lus10022419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.