Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31530 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 84 / 5e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 74 / 2e-14 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 72 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G18810 70 / 7e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G16720 56 / 3e-08 HCF173 high chlorophyll fluorescence phenotype 173 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009715 [exp] 438 / 3e-156 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024383 [exp] 82 / 3e-17 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010846 [exp] 81 / 4e-17 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 72 / 2e-13 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 68 / 3e-12 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007308 [exp] 65 / 2e-11 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10029255 [exp] 65 / 2e-11 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034781 [exp] 56 / 2e-08 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10033322 [exp] 56 / 2e-08 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253900 [exp] 401 / 2e-140 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 83 / 7e-18 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 74 / 2e-14 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 74 / 2e-14 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 67 / 5e-12 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G061200 [exp] 60 / 1e-09 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.007G003500 [exp] 57 / 1e-08 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.014G000400 [exp] 56 / 3e-08 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10022420 pacid=23171651 polypeptide=Lus10022420 locus=Lus10022420.g ID=Lus10022420.BGIv1.0 annot-version=v1.0 ATGGCTACCAAAGTCTGCTTCACTCCAATCCATAATTTCCCAGTTCCAAGACTTGAAAACTTGGCGCAATTCCGACAAACAATCCCTTTTCACCCACTGA CTCTTTCTGCCAGACAATTTTATCTCAAAGTTGGAGGAGCACCATCACCAGCACCAGCAGCAGTGAAAGTCCATGCTCTGAAGGAAGACGTACTGGAGTC ATTAAACTCGGAAACTTCATCCGATTCCGCGACCACATCTCCCTCTTCCTCTAAGCTTGTTCTCGTCGTTGGTGGCACCGGTGGTGTTGGGCAGCTGGTG GTCGCATCATTGCTTAGCCGGAAGATTAAGTCGCGATTGTTACTACGAGATCCTGAGAAAGCAACTGCACTCTTTGGCGGTCAAGATGATGAGATATTGG AGGTACTCAAGGCAGACACTAGGAATTCCGGGGATCTAGATCCATCCATGTTTGAGGGAGTCACACATGTGATATGTTGCACAGGGACAACTGCCTTTCC TTCGAGACGATGGGATGGAGATAATACACCAGAAAGAGTAGATTGGGAAGGTGTTAGGAATCTTGTTTCTGCTCTGCCACCATCAGTGAAGAGGCTTGTT CTGGTTTCTTCAGTTGGTGTAACCAAGTTCAATGAACTACCTTGGAGTATTATGAATCTGTTTGGTGTGCTCAAATACAAGAAGATGGGGGAAGACTTTG TTCGCGAATCCGGTCTTCCATTTACCATAATCAGACCTGGGAGATTAACCGACGGACCATACACATCATATGATTTGAACACTCTCCTAAAAGCCACTGC TGGTGAGCGACGTGCCGTCATCATTGGCCAAGGAGATAAACTCGTTGGAGAAGTCAGCAGGATTGTAGTAGCTGAAGCTTGCATTCAGGCATTGGACATA GACTTCACTCAAGGCAAAGCCTATGAGATCAATTCAGTTGTGGGGGAAGGTCCTGGCAGTGATCCCAAAAAATGGAGGGACTTATTCAAAGCAGTCCAAG ACGACCAATGA
AA sequence Show only first row Show all	>Lus10022420 pacid=23171651 polypeptide=Lus10022420 locus=Lus10022420.g ID=Lus10022420.BGIv1.0 annot-version=v1.0 MATKVCFTPIHNFPVPRLENLAQFRQTIPFHPLTLSARQFYLKVGGAPSPAPAAVKVHALKEDVLESLNSETSSDSATTSPSSSKLVLVVGGTGGVGQLV VASLLSRKIKSRLLLRDPEKATALFGGQDDEILEVLKADTRNSGDLDPSMFEGVTHVICCTGTTAFPSRRWDGDNTPERVDWEGVRNLVSALPPSVKRLV LVSSVGVTKFNELPWSIMNLFGVLKYKKMGEDFVRESGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGERRAVIIGQGDKLVGEVSRIVVAEACIQALDI DFTQGKAYEINSVVGEGPGSDPKKWRDLFKAVQDDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	0	1
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	1.0	0.9700
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	4.2	0.9426
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	5.7	0.9346
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	6.0	0.9259
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10010419 [exp]	6.8	0.8965
AT5G62840			Phosphoglycerate mutase family...		Lus10007865 [exp]	7.1	0.9274
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	7.9	0.9253
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	9.8	0.9311
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	12.3	0.9016
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	14.9	0.8851

Compare expression of checked genes

Lus10022420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.