Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77210 746 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT4G02050 594 / 0 STP7 sugar transporter protein 7 (.1) AT5G26340 540 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G11260 499 / 2e-173 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19940 498 / 4e-173 Major facilitator superfamily protein (.1) AT1G50310 494 / 1e-171 ATSTP9 sugar transporter 9 (.1) AT4G21480 489 / 8e-170 STP12 sugar transporter protein 12 (.1) AT3G19930 487 / 1e-168 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 469 / 6e-162 ATSTP11, STP11 sugar transporter 11 (.1) AT3G05960 444 / 3e-152 ATSTP6 sugar transporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036325 [exp] 533 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10010534 [exp] 532 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 531 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 511 / 9e-178 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 501 / 2e-174 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 486 / 2e-168 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 478 / 1e-165 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10009656 [exp] 478 / 3e-165 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10040991 [exp] 462 / 4e-159 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253800 [exp] 782 / 0 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G085200 [exp] 767 / 0 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G113300 [exp] 579 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 578 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.008G151100 [exp] 524 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.009G048500 [exp] 512 / 4e-180 AT1G77210 516 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.010G089800 [exp] 503 / 7e-175 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 501 / 3e-174 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 499 / 1e-173 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 498 / 4e-173 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10022421 pacid=23171736 polypeptide=Lus10022421 locus=Lus10022421.g ID=Lus10022421.BGIv1.0 annot-version=v1.0 ATGGCCGGCGGAGGAGCAACCGGGAATGCAAACCTCAAACGTGCTCATCTATACGAGTACAAAATCACAGGCTATTTCATTTTCTCCTGTGTCGTTGGAG CCATCGGCGGCTCCCTCTTCGGCGTCGATCTTGGCGTTTCCGGCGGAGTTACTTCCATGGATGATTTCTTGAAGGAGTTTTTCCCAAAAGTGTACAGAAG AAAACAGGCGCATCTGAACGAGACAGATTACTGTAAATACGACAACCAGGTGCTCACTCTCTTCACTTCTTCACTCTACTTCGCCGCCTTAATCTCCACA TTCGGCGCATCCTACGTTACAAGGAGCAAGGGCCGCCGAGCTAGCATCCTCTGCGGATCAGTCAGCTTCTTCCTCGGCGCCGTTGTCAATGCCGCCGCCG TCAACGTCCCTATGCTCATCGTCGGCCGTGTCTTCCTCGGCGTCGGAATCGGCTTCAGCAATCAGGCAGTGCCGCTGTACCTGTCGGAAATGGCGCCGGC GAAAATTAGGGGAATGGTGAACCAACTGTTCCAGCTAACGACGTGTTTGGGGATCTTAATAGCCAATCTGATCAACTACGGAACGGAGAAGATCCACCCG TGGGGATGGCGGGTGTCGTTGGGGTTCGCGGCGGTACCGGCGGTGATGATGTTCATCGGCGGGATATTCATGCCGGAATCCCCCAACAGCCTGGTAGAGC AAGGCAGGGACAAAGAAGCAAGAGAAGTACTGGAGAGAGTGAGAGGCACCAAAAACGTGGACGCGGAGTTTCTCGACATGAAAGAAGCCAGCGAAGAAGC TCGAGCAGTGAAAAACCCCTTCAGGAATCTTCTCAAGAGGAAGAATCGGCCTCAGCTCGTGATCGGAGCGATCGGAATCCCGATGTTCCAGCAACTCACG GGGAATAACTCAATCCTCTTCTACGCCCCTGTGTTTTTCCAGACCATGGGATTCGGATCTGGAACGTCCCTATACTCTTCCATTATAACAAACGCTGGCC TCGTCGCCGGAGCTCTCATGTCGATGGTTCTGGTCGATAGAGTAGGCCGGCGAGCACTCTTCCTCGAAGCTGGTGTGGAAATGATCTGTTACATGGTATT GGTGGGCGTGACATTAGGTTACAAGTTCGGAGACGGAGTGGCGCTGTCGAAAGGATACTCGATTCTGCTCGTGATAGTGATTTGCTTGTTCGTGACGGCT TTCGGGAGATCTTGGGGGCCGTTAGGGTGGCTGGTTCCGAGCGAGCTGTTTCCATTGGAGACGAGATCTGCAGGGCAGAGTGTGGTTGTCTGTGTGAATA TGATCTTCACTGCTCTGATTGCTCAATGCTTTCTGGTGTCGCTCTGCCATCTCCGCTTCGGGATATTCTTGCTCTTTGCTGGTCTCATCTTGATCATGAC CATCTTCATTGCGCTCTTGCTCCCTGAAACCAAGCAAGTTCCTATTGAGGAAGTTTACCTTCTCTTCGAGAATCACTGGTTCTGGAAGAACATAGTTGGT AAGCGCAGGGAGGATAAAGAACTGGAAGAAGTTAAGCTCTCAACTCAGCAGTCATGA
AA sequence Show only first row Show all	>Lus10022421 pacid=23171736 polypeptide=Lus10022421 locus=Lus10022421.g ID=Lus10022421.BGIv1.0 annot-version=v1.0 MAGGGATGNANLKRAHLYEYKITGYFIFSCVVGAIGGSLFGVDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLNETDYCKYDNQVLTLFTSSLYFAALIST FGASYVTRSKGRRASILCGSVSFFLGAVVNAAAVNVPMLIVGRVFLGVGIGFSNQAVPLYLSEMAPAKIRGMVNQLFQLTTCLGILIANLINYGTEKIHP WGWRVSLGFAAVPAVMMFIGGIFMPESPNSLVEQGRDKEAREVLERVRGTKNVDAEFLDMKEASEEARAVKNPFRNLLKRKNRPQLVIGAIGIPMFQQLT GNNSILFYAPVFFQTMGFGSGTSLYSSIITNAGLVAGALMSMVLVDRVGRRALFLEAGVEMICYMVLVGVTLGYKFGDGVALSKGYSILLVIVICLFVTA FGRSWGPLGWLVPSELFPLETRSAGQSVVVCVNMIFTALIAQCFLVSLCHLRFGIFLLFAGLILIMTIFIALLLPETKQVPIEEVYLLFENHWFWKNIVG KRREDKELEEVKLSTQQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	0	1
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	2.4	0.9769
					Lus10018816 [exp]	5.7	0.9610
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	6.9	0.9662
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	7.1	0.9667
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	8.8	0.9631
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	10.6	0.9611
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	11.7	0.9660
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	12.0	0.9563
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	12.8	0.9635
AT5G65030			unknown protein		Lus10026048 [exp]	14.0	0.9422

Compare expression of checked genes

Lus10022421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.