Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09150 380 / 4e-132 ATHY2, GUN3, HY2 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009713 [exp] 565 / 0 AT3G09150 383 / 1e-133 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G048000 [exp] 459 / 2e-162 AT3G09150 397 / 6e-139 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) Potri.001G253700 [exp] 454 / 7e-161 AT3G09150 400 / 4e-140 GENOMES UNCOUPLED 3, ARABIDOPSIS ELONGATED HYPOCOTYL 2, phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05996 [flax] [poplar] Fe_bilin_red Ferredoxin-dependent bilin reductase
Representative CDS sequence Show only first row Show all	>Lus10022422 pacid=23171635 polypeptide=Lus10022422 locus=Lus10022422.g ID=Lus10022422.BGIv1.0 annot-version=v1.0 ATGTGTGGCGGTAGGGATGGACAGGGCATCAGTCCCAAAGAAACATTCACTAATGAGCTCTGCTCTGCGATAAAACCTTCTAAACCCCTTTCGCTTCCAT CGACCAGCCATATACCCATGGCTTCTTCGTCTCCCTCTTCCACTCCTTGTCCTTCCAGCAGCTGTGGCGGCTGGGGCAAGCCTCACCACCCACTTCCACT CTCTGCCTCTTTAGTTCCTTCTCAATCTCTTTCTTCCTCATCTTTCTCATATGGGAAATTCATTCACTTCGCCCTCACTGAAACTGAACGCCAGACCCGT TTACTCCCATCTCCCCTCCAGGAAAAGTACAATTCACTTACTGCAATGGATGGAAGAACACAACTTGAAATGCTGTCATTTCAATCTCCAAAGATTAGGC TACTCCGAAGTTTGAGCATAGAGAATGAAACCATGCAGGTTTTGGACTTTGCTGGATTTGCCAGACCAGAATTCGATGTTCCCATATTCTGTGCCAACTT CTTCAGCACTGCCAACATAAACATCATAGTATTAGACCTCAACCCTTTGCATGACATTGTAGATCGAAAAGATTACAAGGAGAAGTACTATACTAAATTA ATGGCCTTAGGTCTTAGGTATGCAGAGCTTTTCCCATGGGGAGGTAAGCTGACCAGTGAGTCTCTGAAGTTCTTCTCCCCAATTGTGATATGGACCAAGT TTCCTCCAGAGGCATGCATGCATGATGGTTTGTATTCTGCATTCTCAGACTACTACAAGGCTTGGCTTCACCTGATAGACGATGCTGAAGAGGAAACAGA TGAAGTTCAAGTTTCGTGCAACCGTGAAGCGCAACACCGTTATCTTACTTGGAGAGCAGAAAAGGACCCGGGACATGGGATTCTGAAGAAGTTGATAGGG GAAATGAGCGGAAAGGAATTAGTGAGGAACTTCCTCTTCGAGGGGATTAAGGATATGGGAAGCAAAGGGTTTCTGGACTACTTCCCGGAGTACCGCTGCG ACGACGGGTCTGTCAACGAGAAACGTAGCATGATTGGGAAGTCGTTTGAAAGCCGCCCTTGGGATTCGACGGGAGAATTCATCAAAAGCTAG
AA sequence Show only first row Show all	>Lus10022422 pacid=23171635 polypeptide=Lus10022422 locus=Lus10022422.g ID=Lus10022422.BGIv1.0 annot-version=v1.0 MCGGRDGQGISPKETFTNELCSAIKPSKPLSLPSTSHIPMASSSPSSTPCPSSSCGGWGKPHHPLPLSASLVPSQSLSSSSFSYGKFIHFALTETERQTR LLPSPLQEKYNSLTAMDGRTQLEMLSFQSPKIRLLRSLSIENETMQVLDFAGFARPEFDVPIFCANFFSTANINIIVLDLNPLHDIVDRKDYKEKYYTKL MALGLRYAELFPWGGKLTSESLKFFSPIVIWTKFPPEACMHDGLYSAFSDYYKAWLHLIDDAEEETDEVQVSCNREAQHRYLTWRAEKDPGHGILKKLIG EMSGKELVRNFLFEGIKDMGSKGFLDYFPEYRCDDGSVNEKRSMIGKSFESRPWDSTGEFIKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10022422 [exp]	0	1
					Lus10019295 [exp]	13.3	0.6124
					Lus10033142 [exp]	14.1	0.6374
					Lus10000861 [exp]	18.0	0.6358
AT5G10960			Polynucleotidyl transferase, r...		Lus10029713 [exp]	21.9	0.5814
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	23.7	0.6217
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	33.2	0.6281
AT5G06310		ATPOT1B, ATPOT1	protection of telomeres 1b, Nu...		Lus10031803 [exp]	51.0	0.5875
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	73.5	0.5337
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	87.3	0.5276
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10022298 [exp]	102.0	0.5711

Compare expression of checked genes

Lus10022422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.