Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13370 1964 / 0 CHR5 chromatin remodeling 5 (.1) AT2G25170 539 / 1e-164 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 494 / 3e-150 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT3G06400 462 / 3e-140 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 461 / 2e-139 CHR17 chromatin remodeling factor17 (.1.2) AT5G44800 471 / 3e-136 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G06010 439 / 2e-131 ATCHR12 Homeotic gene regulator (.1) AT5G19310 424 / 2e-126 Homeotic gene regulator (.1) AT2G44980 386 / 4e-115 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G66750 371 / 1e-110 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009711 [exp] 2791 / 0 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10005339 [exp] 540 / 8e-165 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 537 / 9e-164 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10033967 [exp] 469 / 4e-137 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10009712 [exp] 414 / 2e-132 AT2G13370 156 / 7e-43 chromatin remodeling 5 (.1) Lus10038363 [exp] 457 / 2e-131 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10036223 [exp] 440 / 1e-126 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10034064 [exp] 414 / 1e-122 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 412 / 7e-122 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253400 [exp] 2400 / 0 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 2184 / 0 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.006G262200 [exp] 552 / 9e-169 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 540 / 2e-164 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.010G021400 [exp] 468 / 3e-142 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 467 / 1e-141 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.003G110100 [exp] 471 / 4e-136 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 471 / 4e-136 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.010G091200 [exp] 427 / 4e-127 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 427 / 5e-127 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10022423 pacid=23171783 polypeptide=Lus10022423 locus=Lus10022423.g ID=Lus10022423.BGIv1.0 annot-version=v1.0 ATGGCTTTCTTTAGGAACTATTCTCCAGAAACTATCTCTAACAGTGCACCAGAAGAGAAGGGTCAGAATCTTGGTAGAATGGTTGGAAGTGAAGATGTTG ACATGACGTCCAGTGAAAGAGAATTCGATATGAATATTGACGCTCGATATGAAAGTGAGGGTGAACTAGGGGATAGTAGGATGCAAAATGATGGAGTTCC TGATCATGAAGCTAGTGCGAGTAATTCACATTTTCAGCCTTCTGGAAAGAGAAATGTGTCTGGAAAATGGGGTTCAAATTTTTGGAAAGATTGCCGACCT ATGGGTCCTCAGGGTGCATCTGATTCTGGACAGGACTCAAAATCGGATTTAAAAGTTGTTGAAGGTTCGGAAAATAATTTATCAGATGGCCAAGATGACA GATTAGAATCAGAGTATGATGAAGAGGCAAAAGAATCACATAAAGAGTTGAAGGGACATTCTGATGTTCCTGCTGATGAGATGTTGTCGGATGAATATTA TGAGCAGGATGGAGAAGATCCTACTGATTTGACACACTACAAGGGTTTTAGTAATTCAGTTGGATTGAATTCTAGGCATCAGTCAAATCCTGTGTCAGCA AATAACAGTTTGTCTAGGAGATCAAGGGCCCTGCGGAATAGTAAAGATGATGACGATGATGGTGATGGCGATGCTGATTATGAGGAAGAGGAGGAGGATG AAGATGACCCAGATGATGCTGACTTTGACCCAGACTACGGTGGCACTAGTTTTCGTCCAGGCGATAAGGTTAAAGACTGGGGTGCTGCAGACTCTGACGA TGCGGATGATGATTTGGATGCCTTAGATGATGATGATGATGATTTTTATTACACAAAAAAACCGAAGGGAAGACAGCGGGTTAACGGTGGCCGTAACACA AAACCTGATAGAGAGCGCAAGCCCTCAAATTCTCAAGCACGGCAAAGAAGAGGCAAGACATCATATGAAGATAATGAGTTCTCCGCTGAGGATTCAGAGA GTGAGAGTGATGAAGAATTTAAAAGTATGACTCGTAGAGGAACAAACCTTCGGAAGTCTAATGCTCGCTCATTAACACATACCAGTGGGAGAAATAATGA AGTTCGCAGTTCAGGTAGGTCAGTCCGGAAGGTATCTTATGTTGAAAGTGATGAAAGTGAAGAAATGGATGAGACAAAGAAGAAGAAATCTCTAAAGGAA GAAATGGAGGATGATGATGGAGATTGTATAGAAAAGGTGTTGTGGCATCAGCCAAAGGGCATGGCTGAAGAAGCTCTTAAGAACGATAAATCAGCAGAAC CTGTTCTATCTACTCACATATATGATTTGGAGCCAGATTGGAATGCTGTGGAATTCTTGATTAAGTGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAA ATCTATCTCTGAACTACAAAATCTTAGCGGTTTTAAGAAGGTGCTGAACTATACCAAAAAAGTAGTAGAAGATATGAGGTACCGGAGGATGCTCACTCGT GAAGAGGTGGAAAGAGTTGTTGCTGACCGAATTGGCAAGGATAGTTCTGGTAATATTATCCCCGAGTATCTAGTCAAGTGGCAAGGACTTTCTTATGCTG AGGCAACCTGGGAAAAGGATGTTGATATTGCTTTTGCTCAAGATGCAATAGATGAATTTAAGGCACGTGAGGCAGAAATTGCCGTACAAGGAAAAACATT GGATTTGCAGCGAAAGAAAAGCAAAGCAAGTTTGAGAAAGCTTGATGAGCAGCCTGAGTGGATCAAAGGAGGAAAGCTTCGTGATTATCAGCTGGAGGGC TTGAATTTTCTTGTGAACAGCTGGAGAAATGATACGAATGTCATTTTAGCTGATGAGATGGGTCTTGGGAAAACAGTGCAATCAGTTTCAATGCTTGGTT TTTTACAGTTTGCTCAGCAGGTCCCTGGGCCATTTCTTGTTGTTGTGCCATTGTCCACACTATCCAACTGGGCGAAAGAGTTTAGAAAATGGATTCCGGA TATGAATATTATAGTGTATGTTGGTACCCGTGCCAGCCGGGAGGTTTGCCAACAATATGAATTCTACAATGAGAAAAAAGTTGGTAGGCCGGTAAAGTTC AATGCATTGTTGACTACATATGAAGTTGTTCTGAAGGACAAGGCTGTACTGTCAAAGATCAAATGGAATTATTTGATGGTTGATGAAGCTCACAGGTTAA AAAACAGTGAAGCACAGCTGTACACGACGCTCTGTGAATTCAGTACCAAGAACAAATTGCTGATAACCGGCACTCCTCTGCAAAACAGCGTTGAAGAACT ATGGGCTTTGCTGCATTTTCTTGATCCGGAAAAGTTCAAGAACAAAGATGATTTTGTCCAGAACTACAAGAATCTTAGCTCATTCAATGAAAACGAGCTT GCTAATCTGCATATGGAGTTGAGGCCTCATATTTTAAGAAGAGTCATTAAAGATGTGGAGAAATCGTTGCCTCCCAAAATTGAGCGTATTTTGAGGGTTG AAATGTCTCCTTTACAGAAGCAGTACTATAAGTGGATCTTGGAACGCAACTTCCATGACTTAAACAAAGGAGTTCGTGGAAATCAGGTGTCACTTCTTAA CATTGTGGTAGAGCTGAAGAAGTGTTGTAATCATCCATTTCTCTTTGAAAGTGCTGACCATGGTTATGGAGGGGAGACCTTTGATGATGGCAGCAAATTG GAGAGAGTTATCTTGAGCAGTGGAAAACTAGTAATACTTGACAAATTACTTGTACGATTGCACGAGACAAAACATCGCGTTCTTATTTTCTCACAGATGG TTAGAATGCTGGACATACTGGCAGAGTATATGAAACTCAGAGGGTTTCAGTTTCAGAGGCTTGATGGTAGTACAAAGGCTGAGATGCGTCATCAGGCTAT GGAACATTTTAATGCACCTGGAAGTGATGATTTTTGCTTTCTTCTATCAACTAGGGCGGGTGGTCTTGGTATAAACCTCGCAACAGCCGACACGGTTATA ATATTTGATTCAGATTGGAATCCACAAAATGACCTGCAGGCTATGAGTAGAGCTCATAGAATTGGACAACAAGAAGTTGTTAACATCTACAGATTTGTGA CGAGCAAAAGCGTCGAGGAGGATATCCTGGAACGAGCTAAAAAGAAAATGGTTCTTGACCATTTGGTGATCCAGAAGTTGAATGCAGAGGGGAGACTAGA AAAGAAAGAAGCAAAGAAGGGGAGTTGTTTTGACAAAAATGAACTGTCTGCAATTCTGCGGTTTGGGGCAGAGGAACTCTTTAAAGATGAAAGAAGTGAT GAAGAAAACAAGAAAAGGCTCTTAAGCATGGATATAGATGAAATCCTGGAAAGAGCAGAGAAGGTTGAAGAAAAGGAAGGTGCACAAGAGGAAGGGCATG AATTGTTAAGTGCATTTAAGGCAAGTCTTTATATCCAACATAGTTTCATGCAATTCTGTTTTCCGTGCATGACTATAGTGTTTAGTTTTGTTGCAAATTT TGGTAGTGCTGAAGATGATACAAGTTTCTGGAGCCGGTGGATAAAACCAGAAGCTGTAGCTGATGCTGAAAACCATTTAGCTCCCCGTTCAGCAAGAAAT ACGAAGAGCTATGCTGAGACAGATCCAGCAGGGAGAGGTGCGAAACGAAAAAAGAAAGGTTCTGAGCCATCTGAACCTCAGGAGAGAGTGCTGAAGCGTA GAAAAGCGGCAGAGAACTCTACCCCGTTAGTATCTATGATTGATGGAGCTTCTGCCCAAGTAAGAGATTGGTCGTATGGGAATCTGTCTAAGAGAGATGC CTTGCGCTTTTCTCGTGCGGTAATGAAGTTTGGAAATCCGAGCCAACTTGATTTGATAGCTGCTGACGTCGGTGGAGCTATTGCAGCAGCTCAACCAGAT GCACAGATTGAGCTTTTTGATGCCTTGGTAGAGGGTTGTAAAGAAGCTACCGAAGTAGAACATATGGACCCAAAGGGCCCATTGTTAGATTTTTTTGGTG TTCCTGTTAAGGCTAATGATTTGCTCAATCGTGTTCAAGAGCTTCAGCTACTGGAAAAACGAATTAATCGCTATGAGAATCCCGTTGCACAGTTCCGTGT ATTGTCAGACCTCAAACCTTCAAATTGGTCTAAGGGTTGTGGGTGGAATATGATTGATGATGCACGATTACTTCTCGGCATATATTACCACGGATTTGGT AATTGGGAAAAGATAAGGTTAGATGAAAGGCTTTGCCTCTCAAAGAAGATTGCCCCAGTAGAACTCCAGCATCATGAGACATTTCTACCACGGGCCCCAA ATTTGAGGGACCGGGCTAATGCTCTCTTAGAAATGGAACTTACAGCTGCTGGTGGCAAGAATTCCAAGGTCAGGGCAGGTCGAAAAGCTTCTAAAAAGGA GACTGGACCTCTTGTCAATGATGATGCTGCATTTCGGATGAGGGCCAAGAAGATGAAATCTAATTTAGGGATGGTCAATACCCAGAGCAGCAGAAACCGA CATCAGAAACCCCAGAGAGTTGAACAGCTAGTGAAAGAGGAAGGTGAGATGTCAGATAATGAAGAATTGAGCGTCCAATTCAAGCAAATGAAATGGACGG AATGGTGTCATGATGTCATGGTTGAGGAGATTAAAACACTTAAACGTCTCAATAGGCTTCAGACTACCAGTGCTGATCTCCCAAAGGAGAAGGTACTCTC AAAGATTCGGACCTATCTACTGCTTATTGGGAGAAGAATAGACCAAATTATCTCAGAATACGAAGACCTTTATAAGCCAGATAAGTTAGGAATGCGGCTG TGGAAGTATGTTTCGACCTATTCAAATTTATCTGGGGAGAAGCTTAAACAAACATACTCAAAATTGAAAAAGGAGCTGGATGAGGAGGCAGGGGTTGGTC CCTCCTATATGAATGGAGATGGGGATTCAATTTATTTCCCTCAGCTTTCAGGTCATGCTGAGAGACAAAGAGGGTACAAAAATGCTTCTGGCTTTCCATT GTCAGATCCAATTCAGAAAGGCATTGACACAGGTAAATTTGAAGCATGGAAACGACGGAGAAGAGCTGAAGCTGAAATACCTTTTCAAACACATACGCTT CCCCAACCTCAACCTCCGGCACCGCGGTTGATGAATAATAATGCCAACCGTGTGGTCGATCCTAATTCATTGGGGATCCTTGGTGCTGCCCCGTCTGATA CTAGACAGTTCAGTAATGGGAGGCCTTACAGGATGCGTCAAGCTGGTTTTCCTCCGAGATAG
AA sequence Show only first row Show all	>Lus10022423 pacid=23171783 polypeptide=Lus10022423 locus=Lus10022423.g ID=Lus10022423.BGIv1.0 annot-version=v1.0 MAFFRNYSPETISNSAPEEKGQNLGRMVGSEDVDMTSSEREFDMNIDARYESEGELGDSRMQNDGVPDHEASASNSHFQPSGKRNVSGKWGSNFWKDCRP MGPQGASDSGQDSKSDLKVVEGSENNLSDGQDDRLESEYDEEAKESHKELKGHSDVPADEMLSDEYYEQDGEDPTDLTHYKGFSNSVGLNSRHQSNPVSA NNSLSRRSRALRNSKDDDDDGDGDADYEEEEEDEDDPDDADFDPDYGGTSFRPGDKVKDWGAADSDDADDDLDALDDDDDDFYYTKKPKGRQRVNGGRNT KPDRERKPSNSQARQRRGKTSYEDNEFSAEDSESESDEEFKSMTRRGTNLRKSNARSLTHTSGRNNEVRSSGRSVRKVSYVESDESEEMDETKKKKSLKE EMEDDDGDCIEKVLWHQPKGMAEEALKNDKSAEPVLSTHIYDLEPDWNAVEFLIKWKGQSHLHCQWKSISELQNLSGFKKVLNYTKKVVEDMRYRRMLTR EEVERVVADRIGKDSSGNIIPEYLVKWQGLSYAEATWEKDVDIAFAQDAIDEFKAREAEIAVQGKTLDLQRKKSKASLRKLDEQPEWIKGGKLRDYQLEG LNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQFAQQVPGPFLVVVPLSTLSNWAKEFRKWIPDMNIIVYVGTRASREVCQQYEFYNEKKVGRPVKF NALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLCEFSTKNKLLITGTPLQNSVEELWALLHFLDPEKFKNKDDFVQNYKNLSSFNENEL ANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGETFDDGSKL ERVILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMKLRGFQFQRLDGSTKAEMRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVI IFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSCFDKNELSAILRFGAEELFKDERSD EENKKRLLSMDIDEILERAEKVEEKEGAQEEGHELLSAFKASLYIQHSFMQFCFPCMTIVFSFVANFGSAEDDTSFWSRWIKPEAVADAENHLAPRSARN TKSYAETDPAGRGAKRKKKGSEPSEPQERVLKRRKAAENSTPLVSMIDGASAQVRDWSYGNLSKRDALRFSRAVMKFGNPSQLDLIAADVGGAIAAAQPD AQIELFDALVEGCKEATEVEHMDPKGPLLDFFGVPVKANDLLNRVQELQLLEKRINRYENPVAQFRVLSDLKPSNWSKGCGWNMIDDARLLLGIYYHGFG NWEKIRLDERLCLSKKIAPVELQHHETFLPRAPNLRDRANALLEMELTAAGGKNSKVRAGRKASKKETGPLVNDDAAFRMRAKKMKSNLGMVNTQSSRNR HQKPQRVEQLVKEEGEMSDNEELSVQFKQMKWTEWCHDVMVEEIKTLKRLNRLQTTSADLPKEKVLSKIRTYLLLIGRRIDQIISEYEDLYKPDKLGMRL WKYVSTYSNLSGEKLKQTYSKLKKELDEEAGVGPSYMNGDGDSIYFPQLSGHAERQRGYKNASGFPLSDPIQKGIDTGKFEAWKRRRRAEAEIPFQTHTL PQPQPPAPRLMNNNANRVVDPNSLGILGAAPSDTRQFSNGRPYRMRQAGFPPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	1.4	0.9015
AT3G06670			binding (.1.2)		Lus10037742 [exp]	4.9	0.8855
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	5.7	0.7946
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	5.7	0.8520
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	6.5	0.8959
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	7.5	0.8566
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10035857 [exp]	8.3	0.8211
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	8.5	0.7924
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	8.7	0.8731
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	8.8	0.8574

Compare expression of checked genes

Lus10022423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.