Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13360 668 / 0 SGAT, AGT1, AGT L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009710 [exp] 717 / 0 AT2G13360 742 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253300 [exp] 687 / 0 AT2G13360 703 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2) Potri.009G047700 [exp] 675 / 0 AT2G13360 707 / 0.0 L-serine:glyoxylate aminotransferase, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, alanine:glyoxylate aminotransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10022424 pacid=23171696 polypeptide=Lus10022424 locus=Lus10022424.g ID=Lus10022424.BGIv1.0 annot-version=v1.0 ATGGATTACGTATATGGACCTGGAAGGAACCACCTGTTCGTCCCTGGCCCTGTTAACATACCAGAGCAAGTCCTTCGTGCTATGAACCGAAACAACGAAG ATTACCGCTCTCCCGCCATTCCTGCTCTTACCAAGACTCTCCTCGAAGATGTCAAGAAGATTTTCAAAACTACTTCTGGAACTCCCTTCATCTTCCCAAC CACCGGTACCGGTGCATGGGAGAGCGCTCTGACAAACACTCTGTCACCTGGGGACAAGACGGTTTCATTCCTGATTGGTCAGTTCAGTTTGTTGTGGGTT GACCAGCAGAAACGTCTTGGCTTCGATGTTGATGTTGTGGAGAGTGATTGGGGTGAAGGTGCCAAGCTCGATGTTCTTGCTGCTAAGCTTGCTGCTGATT CTGCACATACCATCAAGGCTGTCTGCATTGTTCATAATGAGACTGCCACTGGTGTCACCAACAACCTCGCCAAGGAAGCGGTTGCTCAAGGAAACTTGGA TAAAGGTAGAGCTGTTGACGAACCATGCCGCTCGCGAGCAGCTCGGCGTTCGGCTCGGAAAAACCGCCCGCCAGGCTCGCGAGCCAGCTCATTCGAGGCT CGTTCGTTGGCTCGAATGATAGATGACTATCGTCATCCTGCTCTGCTTTTGGTGGATGGGGTCTCTTCAATCTGTGCTCTTGATTTCCGTATGGATGAGT GGGGTGTGGATGTGGCTTTGACTGGCTCTCAGAAGGCTCTTTCCCTCCCCACTGGGTTGGGAATTGTGTGTGCAAGCCCCAAAGCTCTTGAGGCCTCCAA GACTGCTAAATCCAACAGGGTCTTCTTTGATTGGAATGACTACTTGAAGTTCTACAAGCTTGGAACTTACTGGCCATACACACCTTCAATCCAGCTGCTT TATGGATTGAGAGCAGCTCTGGACCTCATCTTTGAAGAAGGCCTTGACAATGTCATCGCCAGGCACGCCCGGTTGGGCAAAGCAACAAGGCTTGCTGTAG AGGCATGGGGGTTGAAGAACTGCACACAGAAAGAGGAATGGGTCAGCGACACTGTAACTGCTGTGTTGGTTCCCCCTTACATTGACAGTGCTGAGATAGT GAGGAGAGGATGGAAAAGATACAACCTCAGCTTAGGTTTGGGTCTTAACAAGGTTGCTGGCAAGGTATTCAGAATAGGGCATCTGGGTAACTTGAACGAG CTGCAACTTCTGGGATGCCTTGCTGGAGTGGAGATGTTACTGAAGGATGTTGGGTACCCTGTGAAGTTAGGAAGTGGAGTTGCAGCAGCAAGTTCCTACT TGCAGAACAACATTCCTATGATTCCTTCCAGGATTTGA
AA sequence Show only first row Show all	>Lus10022424 pacid=23171696 polypeptide=Lus10022424 locus=Lus10022424.g ID=Lus10022424.BGIv1.0 annot-version=v1.0 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFIFPTTGTGAWESALTNTLSPGDKTVSFLIGQFSLLWV DQQKRLGFDVDVVESDWGEGAKLDVLAAKLAADSAHTIKAVCIVHNETATGVTNNLAKEAVAQGNLDKGRAVDEPCRSRAARRSARKNRPPGSRASSFEA RSLARMIDDYRHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSNRVFFDWNDYLKFYKLGTYWPYTPSIQLL YGLRAALDLIFEEGLDNVIARHARLGKATRLAVEAWGLKNCTQKEEWVSDTVTAVLVPPYIDSAEIVRRGWKRYNLSLGLGLNKVAGKVFRIGHLGNLNE LQLLGCLAGVEMLLKDVGYPVKLGSGVAAASSYLQNNIPMIPSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	0	1
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	1.7	0.9468
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	4.2	0.9036
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	4.2	0.9154
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	4.5	0.9243
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	6.2	0.9313
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	6.9	0.9188
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	7.1	0.9153
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	8.4	0.9376
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034382 [exp]	10.6	0.9208
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	11.0	0.9236

Compare expression of checked genes

Lus10022424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.