Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50930 154 / 3e-48 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016731 [exp] 137 / 7e-43 AT5G50930 58 / 2e-11 Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105900 [exp] 158 / 9e-51 AT5G50930 139 / 7e-42 Histone superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022425 pacid=23171666 polypeptide=Lus10022425 locus=Lus10022425.g ID=Lus10022425.BGIv1.0 annot-version=v1.0 ATGGATGGAAGTGATTTGGAGAGAGAAGAGGCCGATTCAGTCGAGGTGCTACTCAGAGACCGCTTCCGTCTCTCTGCCATCTCCGTTGTTGAAGCCCAAG GAAGGAAGATTGGGATGGAAGTATCCGAAACAGTCACTGCTTGCATCTCCGATTTGGCCTTCAAATTTACCGAACAACTGGCCAAGGACCTGGAGCTCTT TGCGCACCATGGTGGCCGGAAATGTGTAAACATGGATGACGTGCTTCTTTCAACTCATAGGAATGAGAACCTGTGTTCCCTATTGAGGCCCTTGAGCAGT GAGTTGAGAGGAAGAGAAAACCAGTCTGAAAGGAAACGGAAGAAGACATCTAAAAAGGATGATGCCAATGCCAGCAATGCTGTGCATTTGCTCGACTAA
AA sequence Show only first row Show all	>Lus10022425 pacid=23171666 polypeptide=Lus10022425 locus=Lus10022425.g ID=Lus10022425.BGIv1.0 annot-version=v1.0 MDGSDLEREEADSVEVLLRDRFRLSAISVVEAQGRKIGMEVSETVTACISDLAFKFTEQLAKDLELFAHHGGRKCVNMDDVLLSTHRNENLCSLLRPLSS ELRGRENQSERKRKKTSKKDDANASNAVHLLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50930			Histone superfamily protein (....		Lus10022425 [exp]	0	1
AT4G16807			unknown protein		Lus10010996 [exp]	2.0	0.9155
AT5G04250			Cysteine proteinases superfami...		Lus10037388 [exp]	6.3	0.8572
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	6.6	0.9056
AT4G39380			unknown protein		Lus10020841 [exp]	8.9	0.8306
AT5G66800			unknown protein		Lus10019352 [exp]	13.6	0.8283
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	14.3	0.8331
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	15.1	0.8742
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	19.0	0.8320
AT5G49170			unknown protein		Lus10022872 [exp]	19.2	0.8362
AT2G25100			Polynucleotidyl transferase, r...		Lus10028856 [exp]	20.0	0.8530

Compare expression of checked genes

Lus10022425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.