Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61850 320 / 5e-106 LFY LFY3, LFY LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016732 [exp] 563 / 0 AT5G61850 447 / 5e-156 LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106900 [exp] 435 / 6e-152 AT5G61850 433 / 3e-151 LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF01698 [flax] [poplar] SAM_LFY Floricaula / Leafy protein SAM domain
Representative CDS sequence Show only first row Show all	>Lus10022427 pacid=23171725 polypeptide=Lus10022427 locus=Lus10022427.g ID=Lus10022427.BGIv1.0 annot-version=v1.0 ATGGATCCAGAAGCATTCACGGCGAGCTTGTTCAAGTGGGACCCAAGAATAGTAGCAGCAGCCAACAACAATAGGCAACAACAACAACAACAGCTGATGG ATGTTGCTCCTCCACCTCCGGCAGCAGCTATACAGCAGCAGCAGATGGCGGCGGCGGCGGCGGTTTTGGCAATGAGAGGTGGTCCGGCGAGGGACATGGG TGGGCTTGAAGGGTTTTTCCAAAGCTACGGGATAAGGTACTACACTATTGCAAAGATAGCCGAGCTTGGTTTCACAATGAGAACCCTTTTGGAGATGAAG GAGGATGAGCTTGAGGAGATGATGAATAACCTCTCCCACATATTTCGCTGGGAGCTATTCGTCGGTGAGAGGTTCGGCATTAAGGCCGCTGTTAGAGCCG AACGCCGCCGCCTCGATGACCTTGACAGATCAAGACACCCTCACTCCGGCGACACCACCCTTGACGCTCTCTCCCAAGAAGGATTGTCTGAAGAGAGGAT GCAACAAGAGAAGGAAGCAGGTGGGAGTACGTGGGAGGCGGTGGGTGGTGGAGGACAGAGGAAGCTGATCAAGCACAACCAGCAACAGCAGAGGCGGAGG AAGTTTAAGCAGGGAGTGGATGATGATGATCGCCATAACAACAATGATGAACAGGAAGACGACGACGATGATGAGTACAATAATAATAATAATAGTAATA GTAATGTGGTGGTGAGCGGCGGCGGGGAGAGACAAAGGGAGCATCCTTTCATCGTAACGGAGCCTGGGGAGGTGGCACGTGGGAAGAAGAACGGCCTTGA TTACCTCTTCCATCTTTACGAGCAGTGCCGCGATTTCCTTTTCCAGGTTCAGTCCATCGCCAAGGAACGCGGTGAGAAATGCCCCACCAAGGTGACGAAT CAGGTGTTTAGGTACGCGAAGAAAGCAGGGGCGAGCTACATAAACAAGCCAAAGATGAGGCACTACGTGCATTGCTACGCGTTGCACTGTCTGGACGAGG AGGCGTCGAACGCGATGAGGAGGGTGTTCAAGGAAAGAGGGGAGAACGTAGGAGCGTGGAGGCAAGCTTGCTACAAGCCACTTGTGTCGATAGCGGGTAC ACGAGGGTGGGACATTGATGCCATCTTCAATGCACATCCTCGCCTTTCCATTTGGTACGTCCCAACGAAGCTTCGCCAGTTGTGTCACGCTGAGCGTAAT ACTACTACTACTACTGCGTCTACTACTAGTGCCGCCGCTGCTGCTTCTACCTCTGCACCTGTTAACCACCTTCCTTTCTGA
AA sequence Show only first row Show all	>Lus10022427 pacid=23171725 polypeptide=Lus10022427 locus=Lus10022427.g ID=Lus10022427.BGIv1.0 annot-version=v1.0 MDPEAFTASLFKWDPRIVAAANNNRQQQQQQLMDVAPPPPAAAIQQQQMAAAAAVLAMRGGPARDMGGLEGFFQSYGIRYYTIAKIAELGFTMRTLLEMK EDELEEMMNNLSHIFRWELFVGERFGIKAAVRAERRRLDDLDRSRHPHSGDTTLDALSQEGLSEERMQQEKEAGGSTWEAVGGGGQRKLIKHNQQQQRRR KFKQGVDDDDRHNNNDEQEDDDDDEYNNNNNSNSNVVVSGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLFQVQSIAKERGEKCPTKVTN QVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNAMRRVFKERGENVGAWRQACYKPLVSIAGTRGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERN TTTTTASTTSAAAAASTSAPVNHLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10022427 [exp]	0	1
AT3G52610			unknown protein		Lus10022698 [exp]	1.0	0.9996
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	2.8	0.9965
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10018690 [exp]	6.1	0.9933
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Lus10008374 [exp]	8.2	0.9950
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10035793 [exp]	9.2	0.9879
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	9.9	0.9961
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10020268 [exp]	10.3	0.9538
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	11.5	0.9961
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	12.5	0.9897
					Lus10011636 [exp]	12.8	0.9961

Compare expression of checked genes

Lus10022427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.