Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01630 309 / 5e-107 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 137 / 2e-39 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75170 101 / 2e-25 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 99 / 1e-24 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G08690 97 / 1e-23 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 88 / 3e-20 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G09160 86 / 7e-19 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT5G63060 78 / 4e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 74 / 4e-15 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G16380 74 / 5e-15 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016733 [exp] 462 / 1e-167 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 337 / 5e-118 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 334 / 1e-116 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001584 [exp] 153 / 7e-46 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10003699 [exp] 149 / 5e-44 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 128 / 2e-36 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 94 / 3e-22 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 91 / 1e-21 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 91 / 2e-21 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063966 [exp] 314 / 1e-108 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 304 / 5e-105 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 302 / 3e-104 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G135600 [exp] 155 / 2e-46 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 143 / 5e-42 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 142 / 2e-41 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 99 / 3e-24 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 96 / 3e-23 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 95 / 4e-23 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 91 / 3e-21 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10022428 pacid=23171726 polypeptide=Lus10022428 locus=Lus10022428.g ID=Lus10022428.BGIv1.0 annot-version=v1.0 ATGTCCCGTAATGGCGATCAACCATCAGATCCAGATGACAAGCTTGAAATTGAGCGGACCAAATTGAGACTCTTGAGGGACTTGGTCCAGACGAAGGATC CTTCTTCCAAGGAAGTAGATGATGGGACACTGAGGAGGTTTCTGAGAGCGAGGGATATGGACGTAGAGAACGCATGTGCAATGTTCCTCAAATACCTCAA CTGGAAGCACAGTTTCATCCCCAATGGCACCTCCTCTGTTTCCACATCCGACATCTCCACCGACATTTCCCACAACAAGGTGTTCCTCCAAGGTACTGAT CGGACTGGCCGACCCATCTCCGTTGCTTTCGGAAGTCGCCATTTCCAGAACGGCGTTGACGAATTCAAGCGTTATGTAGTTTATGTCATCGAGAAACTCT GCGCAAGTATGGCGGAAGGACAAGAGAAATTTGTGGTGATCGGAGATCTGGAAGGTTGGGGTTATGCAAACAGCGACGTTAGGGGTTATCTGGCTGCTCT GCACATTTTGCAGGATTACTACCCAGAAAGACTTGGGAAGCTGTTCATTGTGAATGTGCCATACATTTTCATGGCAGTGTGGAAAGTTATTTACCCCTTA ATCGACAGCAATACCAAAAGAAAGATTGTATTTGTGGATAACAAGAAGCTGAAATCCACACTTGTAGAGGACATTGATGAAAGCCAGCTGCCAGAGATAT ACGGAGGCAAACTGCCTTTAGTTCCTATCCACCTCACCTGA
AA sequence Show only first row Show all	>Lus10022428 pacid=23171726 polypeptide=Lus10022428 locus=Lus10022428.g ID=Lus10022428.BGIv1.0 annot-version=v1.0 MSRNGDQPSDPDDKLEIERTKLRLLRDLVQTKDPSSKEVDDGTLRRFLRARDMDVENACAMFLKYLNWKHSFIPNGTSSVSTSDISTDISHNKVFLQGTD RTGRPISVAFGSRHFQNGVDEFKRYVVYVIEKLCASMAEGQEKFVVIGDLEGWGYANSDVRGYLAALHILQDYYPERLGKLFIVNVPYIFMAVWKVIYPL IDSNTKRKIVFVDNKKLKSTLVEDIDESQLPEIYGGKLPLVPIHLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	0	1
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	3.6	0.8315
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10041765 [exp]	4.5	0.8068
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	5.5	0.8180
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	5.8	0.8197
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	9.2	0.8053
AT3G49720			unknown protein		Lus10039648 [exp]	9.2	0.8169
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	9.5	0.8001
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	9.5	0.7900
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	10.4	0.7752
AT4G17100			unknown protein		Lus10001086 [exp]	10.7	0.7894

Compare expression of checked genes

Lus10022428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.