Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51020 417 / 1e-148 CAA33, CRL constitutive activator of AAA-ATPase, crumpled leaf (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016734 [exp] 535 / 0 AT5G51020 433 / 2e-155 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10043210 [exp] 412 / 2e-146 AT5G51020 393 / 1e-139 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10032529 [exp] 337 / 4e-117 AT5G51020 333 / 3e-116 constitutive activator of AAA-ATPase, crumpled leaf (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109800 [exp] 451 / 6e-162 AT5G51020 438 / 4e-157 constitutive activator of AAA-ATPase, crumpled leaf (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF06206 [flax] [poplar] CpeT CpeT/CpcT family (DUF1001)
Representative CDS sequence Show only first row Show all	>Lus10022429 pacid=23171665 polypeptide=Lus10022429 locus=Lus10022429.g ID=Lus10022429.BGIv1.0 annot-version=v1.0 ATGGGAACCGGAACAAGCACCGGCGCGGACAAGGATTCCAATGGATGGGGCAGAGTTCAGGGATTGGCCATGAAGACGCTGGTTTTGATCGGCGGAGCGC TTTTGGTGAAGCGGCTTACTAAATCTACTACCCGTTGGGACCATGCTCGCCTCGTCTCTCAATCTCTCACGGGCGAGAAGTTTTCGAGGGACCAAGCATC CAGGGATCCAGATAATTACTTCAACATTAGGATGTGTTTGTGCCCTGCCGCTGAGATGGTGGATGGTTCAAAGGCTTTGTATTTTGAGCAGGCGTTCTGG CGAACTCCCCAGAAACCCTTTCGACAGAGGTTTTACATGGTGAAGCCTTGTCCAAAAGAATCGAAATGTGATGTGGAGGTACCAGCTTTATGGTCTGCCT TGGTGTTCTATAGTTACACCTTCAAACAGCATTTGAATCTTCCTGTCCGTTTGGCTGGCAGAGATGCAGAGGAGTACAGAAATTTCTGCGATAGAGCAAC CGATCAACGCCCGCTTCCTGAAGAAGTCATTGGTGATATTGCAGAGCACTTGACTACATTGCATCTAAAACGCTGTGACCGTGGTAAACGCTGCTTGTAT GAAGGTTCTACACCTCCAGGAGGATTCCCTAACACTTGGAATGGTGCCACCTACTGTACCTCGGAACTTGCTGTGTTGAAGAACAACGAAGTGCATATGT GGGATAGAGGCTACGATGACGCTGGAAACCAGGTTTGGGGGGCGCGGGAACGTGCTTACGAATTCAAGCCTGCACCTGCCACTTGTAGTCTGAATGGGAT AGTCTCTTCTTTAAACTTGCCACTTTCTCAATCAATTGACAAAAAGATACAAGGCTCATTTGTCTTGGAAGACTGA
AA sequence Show only first row Show all	>Lus10022429 pacid=23171665 polypeptide=Lus10022429 locus=Lus10022429.g ID=Lus10022429.BGIv1.0 annot-version=v1.0 MGTGTSTGADKDSNGWGRVQGLAMKTLVLIGGALLVKRLTKSTTRWDHARLVSQSLTGEKFSRDQASRDPDNYFNIRMCLCPAAEMVDGSKALYFEQAFW RTPQKPFRQRFYMVKPCPKESKCDVEVPALWSALVFYSYTFKQHLNLPVRLAGRDAEEYRNFCDRATDQRPLPEEVIGDIAEHLTTLHLKRCDRGKRCLY EGSTPPGGFPNTWNGATYCTSELAVLKNNEVHMWDRGYDDAGNQVWGARERAYEFKPAPATCSLNGIVSSLNLPLSQSIDKKIQGSFVLED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10022429 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	5.3	0.8664
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	6.5	0.8415
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	9.2	0.8456
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	9.9	0.8265
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	10.1	0.8306
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	10.5	0.8312
AT5G08010			unknown protein		Lus10040520 [exp]	10.6	0.8406
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	14.9	0.8140
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	20.1	0.8210
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	21.2	0.8188

Compare expression of checked genes

Lus10022429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.