Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51010 160 / 5e-51 Rubredoxin-like superfamily protein (.1) AT5G17170 50 / 8e-08 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2) AT1G54500 41 / 0.0001 Rubredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016735 [exp] 246 / 1e-84 AT5G51010 189 / 3e-62 Rubredoxin-like superfamily protein (.1) Lus10027889 [exp] 95 / 7e-26 AT5G51010 102 / 2e-29 Rubredoxin-like superfamily protein (.1) Lus10003157 [exp] 52 / 3e-08 AT5G17170 377 / 3e-133 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10002349 [exp] 52 / 4e-08 AT5G17170 360 / 5e-126 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10015945 [exp] 45 / 3e-06 AT1G54500 182 / 2e-58 Rubredoxin-like superfamily protein (.1) Lus10019005 [exp] 45 / 4e-06 AT1G54500 188 / 1e-60 Rubredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108100 [exp] 154 / 2e-48 AT5G51010 160 / 5e-51 Rubredoxin-like superfamily protein (.1) Potri.019G042600 [exp] 48 / 6e-07 AT5G17170 301 / 3e-103 enhancer of sos3-1, rubredoxin family protein (.1.2) Potri.013G035700 [exp] 44 / 1e-05 AT1G54500 197 / 2e-64 Rubredoxin-like superfamily protein (.1) Potri.005G049000 [exp] 39 / 0.0006 AT1G54500 184 / 3e-59 Rubredoxin-like superfamily protein (.1) Potri.012G109700 [exp] 0 / 1 AT5G51010 0 / 1 Rubredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0045 [flax] [poplar] Rubredoxin PF00301 [flax] [poplar] Rubredoxin Rubredoxin
Representative CDS sequence Show only first row Show all	>Lus10022430 pacid=23171706 polypeptide=Lus10022430 locus=Lus10022430.g ID=Lus10022430.BGIv1.0 annot-version=v1.0 ATGGCGGTGCATCTACAAGCAACAACGGTAACAAGTAGAAGGCTTAATGGCTCTGAACCCCCTCAGCATCTGTTTGCTGCTCTAAAATCATCCTTCTTCT CTCCTTCACTCAACTTGTTACCAGCAGTATCCCGACAACGCCGTCGTCCCCTTTCTGCTTCCACGGCTCCCCAAATCTGCATGCGCCTCGCCTCCAAGCA AGCTTACATTTGCCGGGACTGCGGGTACATTTACAACGACAGAACTCCCTTCGACAAACTCCCTGACAACTACTTCTGCCCTGTTTGTGGTGCATCCAAG AGAAGATTCAGAGCTTACACCCCAGCAGTCACCAAGAATGCCAATGAGAAGGATGCTAGGAAAGCACGCAAAGCTGAACTACAGAGAGACGAGGCTATTG GGCGAGCTTTGCCAATTGCTGTAGTGGTTGGACTTGCCATCCTCGCTGCAATATACTTCTATCTCAACACTACCTTCCAAACCTAA
AA sequence Show only first row Show all	>Lus10022430 pacid=23171706 polypeptide=Lus10022430 locus=Lus10022430.g ID=Lus10022430.BGIv1.0 annot-version=v1.0 MAVHLQATTVTSRRLNGSEPPQHLFAALKSSFFSPSLNLLPAVSRQRRRPLSASTAPQICMRLASKQAYICRDCGYIYNDRTPFDKLPDNYFCPVCGASK RRFRAYTPAVTKNANEKDARKARKAELQRDEAIGRALPIAVVVGLAILAAIYFYLNTTFQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	0	1
AT1G09310			Protein of unknown function, D...		Lus10018630 [exp]	1.0	0.8435
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	4.9	0.8052
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	5.3	0.7965
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10001582 [exp]	11.5	0.7797
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	13.5	0.7652
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	15.0	0.7748
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10018466 [exp]	15.9	0.8145
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10033574 [exp]	19.1	0.7954
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10036916 [exp]	20.8	0.7504
AT4G15930			Dynein light chain type 1 fami...		Lus10006500 [exp]	21.6	0.7651

Compare expression of checked genes

Lus10022430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.