Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51050 679 / 0 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G07320 644 / 0 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT5G61810 602 / 0 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G01100 180 / 3e-52 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 146 / 2e-39 Mitochondrial substrate carrier family protein (.1) AT4G32400 144 / 2e-38 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 124 / 1e-31 Mitochondrial substrate carrier family protein (.1) AT2G37890 123 / 2e-31 Mitochondrial substrate carrier family protein (.1) AT4G26180 122 / 3e-31 Mitochondrial substrate carrier family protein (.1) AT5G64970 108 / 3e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016736 [exp] 847 / 0 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 786 / 0 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 584 / 0 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032523 [exp] 214 / 2e-67 AT5G07320 204 / 3e-64 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 176 / 2e-50 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 174 / 1e-49 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 172 / 3e-49 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 172 / 4e-49 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10002902 [exp] 135 / 2e-35 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108900 [exp] 744 / 0 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 742 / 0 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 181 / 2e-52 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 176 / 7e-51 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 176 / 1e-50 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 171 / 7e-49 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G252100 [exp] 138 / 3e-36 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 133 / 1e-34 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 128 / 6e-33 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 125 / 5e-32 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10022431 pacid=23171671 polypeptide=Lus10022431 locus=Lus10022431.g ID=Lus10022431.BGIv1.0 annot-version=v1.0 ATGGATCATGTTCTGTTGGCTCTCAGAGAGACCAAGGAAGAGAGAGATGTAAGAATTAGGAGTTTGTTCAATTTCTTTGATGTTGGGGATACTGGCTACT TGGATTACGCCCAGATAGAGACTGGACTGTCCGCTCTGCAGATTCCAGCAGAGTACAAGTACGCCAACGATTTGTTAAAGGTCTGCGACGCCAATAGGGA TGGCCGGGTGGATTACCACGAGTTCGCAAGGTATATGGATGATAAAGAGATGGAGTTGTACAGAATTTTTCAGGCCATTGACGTTGAACATAGTGGTTGC ATTTTGCCCGAGGAACTCTGGGATGCACTTGTTAAGGCTGGGCAGCTTGTACTTGCAGGCATTCAGATTGATGACGAGGAGCTTGCACGTTTTGTAGAGC ATGTTGATAAAGATAATGATGGAATTATAACTTTTGAAGAGTGGAGAGATTTTCTGTTGCTATATCCACATGAAGCTACTATGGAGAACATATATCATTA TTGGGAAAGGGTGTGTCTTGTAGACATTGGAGAACATGCTGTTATTCCTGAAGGCATCAGTAAGCAGGTCCATAGGAGTAAGTATTTCATTGCAGGGGGT ATAGCTGGTGCAGCTTCTCGAACTGCAACTGCTCCCCTTGATCGCCTCAAGGTAGTTTTGCAAGTGCAGACAGCACGTGCTTCTCTAGTACCTGCTATAA ACAATATATGGAAGGCAGATGGGTTTCTTGGGTTTTTCCGGGGTAATGGATTGAACGTGATAAAGGTTGCTCCTGAAAGTGCAATTAAGTTTTACACTTA TGAGATATTGAAGACTGTCATTAAAGATTTTAAAGGTGAAGAGGCCACGGACATTGGTGCATCTGGTAGACTTTTGGCTGGTGGATTGGCAGGTGCAGTA GCTCAAGCTGCTGTATATCCAATGGATCTTGTGAAAACTCGATTACAGACTCATCCATGTGAAGGTGGAAAAGCACCAAACTTGGGGAGCCTTACTAGGG ATATATGGGTACATGAAGGGCCTCGAGCTTTCTACAAGGGTCTTGTGCCATCCCTTCTGGGTATTATTCCTTATGCTGGCATTGACCTTGCTGCTTATGA GACTTTGAAGGACATGTCCAAGACATATCTTCTGCTTGATACTGAACCTGGACCTCTTGTGCAACTTGGGTGTGGCACAATCTCTGGAGCCGTTGGAGCA ACGTGTGTCTACCCTTTGCAGGTCATCCGGACTAGAATGCAAGCTCAACAATCCAATGCTGCTGCTGCATATAAGGGGATGTCTGATGTATTTTTAAGGA CAGTTGAGAAAGAAGGTTATAGAGGGTTCTACAAAGGACTGTTTCCTAATCTTCTCAAAGTTGTTCCGGCTGCAAGCATAACCTATATGGTTTATGAAGG TGTGAAAAAGAGATTACAGCTTGAGTAG
AA sequence Show only first row Show all	>Lus10022431 pacid=23171671 polypeptide=Lus10022431 locus=Lus10022431.g ID=Lus10022431.BGIv1.0 annot-version=v1.0 MDHVLLALRETKEERDVRIRSLFNFFDVGDTGYLDYAQIETGLSALQIPAEYKYANDLLKVCDANRDGRVDYHEFARYMDDKEMELYRIFQAIDVEHSGC ILPEELWDALVKAGQLVLAGIQIDDEELARFVEHVDKDNDGIITFEEWRDFLLLYPHEATMENIYHYWERVCLVDIGEHAVIPEGISKQVHRSKYFIAGG IAGAASRTATAPLDRLKVVLQVQTARASLVPAINNIWKADGFLGFFRGNGLNVIKVAPESAIKFYTYEILKTVIKDFKGEEATDIGASGRLLAGGLAGAV AQAAVYPMDLVKTRLQTHPCEGGKAPNLGSLTRDIWVHEGPRAFYKGLVPSLLGIIPYAGIDLAAYETLKDMSKTYLLLDTEPGPLVQLGCGTISGAVGA TCVYPLQVIRTRMQAQQSNAAAAYKGMSDVFLRTVEKEGYRGFYKGLFPNLLKVVPAASITYMVYEGVKKRLQLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10022431 [exp]	0	1
AT5G14680			Adenine nucleotide alpha hydro...		Lus10032142 [exp]	8.2	0.7046
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	8.7	0.6372
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	16.6	0.6906
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	19.3	0.6878
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	19.6	0.6712
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	27.2	0.6760
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	28.7	0.6563
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	32.7	0.6496
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	39.3	0.6631
AT4G04614			unknown protein		Lus10006902 [exp]	40.6	0.6642

Compare expression of checked genes

Lus10022431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.