Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18390 536 / 0 Protein kinase superfamily protein (.1.2) AT1G25390 492 / 9e-167 Protein kinase superfamily protein (.1) AT5G38210 437 / 1e-144 Protein kinase family protein (.1) AT1G66880 419 / 2e-131 Protein kinase superfamily protein (.1) AT2G23450 290 / 8e-88 Protein kinase superfamily protein (.1.2) AT5G66790 269 / 5e-81 Protein kinase superfamily protein (.1) AT1G69910 255 / 1e-75 Protein kinase superfamily protein (.1) AT3G53840 243 / 5e-71 Protein kinase superfamily protein (.1) AT5G02070 242 / 2e-70 Protein kinase family protein (.1) AT4G39110 241 / 7e-69 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016737 [exp] 1296 / 0 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 522 / 4e-178 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 392 / 3e-125 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009150 [exp] 354 / 5e-116 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10032741 [exp] 307 / 4e-94 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 273 / 2e-81 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 265 / 2e-79 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10019657 [exp] 265 / 7e-79 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 251 / 3e-74 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G120800 [exp] 579 / 0 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 578 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 504 / 6e-171 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.017G118100 [exp] 504 / 3e-170 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.015G044750 [exp] 498 / 3e-168 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G096900 [exp] 487 / 1e-163 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.012G054725 [exp] 485 / 2e-163 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.017G118250 [exp] 485 / 5e-163 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 477 / 3e-160 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 471 / 4e-158 AT5G38210 525 / 4e-179 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022432 pacid=23171767 polypeptide=Lus10022432 locus=Lus10022432.g ID=Lus10022432.BGIv1.0 annot-version=v1.0 ATGCCTCCGCCGCGCTGGAGGATTACAATTTCGTCCCTTTTAGCAGCCGCAATCACTTTGATGGCATCGGCGGCATTAGAAGAAGAGCCGACCAGCAGAT ACCAATCCTGCAATCCCAAAAGCTGCGGCACGGGTCCAAACATAACCTACCCATTCTACATCCTGCACAACAAGACCGATTATTGCGGCCTCCGTGGGTT CGGAATCCGCTGCCAATCTGGCAACCCAATCTATAGAACCTCCGCCGCCGACTACGTCATCCGGGACATCGCTTACGACAACCAGACTTTCCTACTTGTG AACCAGCAGTTCATATCCGAACAGGAGGCTTCCGCAGCCGCCTGCCCAACTCCTCAGCAGAACTACTCCTTCGATCGGTCGTCCGTCGAGTACAGCCCCT TCCACGCCAACATCTACTTCTTCTACGGCTGTAACAACGCTTCCTCGTCCTCTTTCCAGGTTCCTGGTAGAGCCTTCCAGCTTCTTCCCTGCAATTCTTC TTCTGATGATAATAATAATAATAAGACGTATCTAGTGTTGAATCCATCGGATGAGGATTTGAATTGGAATCGATCCTTGTGTCGAGCTATGGTGTATGCT CCGGTTCAGTTTAACGAAGAGAAGGAATTGGATTCGTCGTCTATAAAGGATGTGGATTACAGGAAGCTGCTTAGAGATGGGTTTAGGCTCAAGTGGGTTG GATTAGCCGGATACCACTGTGCTGACTGCCGAACAAGTGGAGGAAGGTGTGGGTTTGAAAACGGGAATAGCTCTTGTTACTGTCCTGATGGAACTTCCCA TCCAACTAACTGCTTTAACCGCGGTGGTCTAGGCATTGGAGTCCCAGCTACATTGATGATTTTGCTATTGGCCTGTGTTTATTGGCGTCACCGCAAAAGA AGCCAAACTCCCTCAAGCTTTGCTTCATCCAATGCCTATTTCAAAAAATCTTCCAAGGGAGATGTACAACTAGAAGATGCAAATACTTGTTTCGGCGTTC CCATCTTCTCCTATGGTGAACTTGAACGGGCTACCAACCATTTTGATGCTGAAAGGGAACTAGGAGATGGAGGCTTTGGAACAGTGTACTATGGCAAACT CCGAGATGGAAGGGAAGTTGCAGTTAAGCGGCTTTACGAGCACAACTACAAACGAGTTGAGCAGTTCATGAATGAGGTAGAGATACTCACTCGTTTTCGC CACAAGAACCTTGTGTCACTCTATGGATGCACTTCACGCCATAGCAAGGAACTATTGCTCGTTTATGAGTTCATCTCCAACGGCACAGTGGCTGATCATC TCCATGGGGACAGAGCACTTTCATGTCCATTAATGTGGCCTGTCCGAATGAGCATTGCAATAGAAACAGCAAGTGCACTGTCGTACCTTCATGCTTCTGA TATCATACACCGAGATGTCAAAACCACCAACATTCTCTTGGACAGCAATTTCAGCGTCAAAGTAGCAGACTTTGGCCTCTCAAGGTTGTTCCCAAATGAT GTAACCCATATCTCCACTGCCCCGCAAGGAACTCTGGGCTACTTAGACCCCGATTACCACCGCTGTTACCAACTAACAAACAAGAGTGATGTCTACAGTT TCGGTGTTGTCCTCATTGAGCTTATATCATCCATGCCCGCTGTTGACATTTCCAGGAACAGAGATGAGATCAATCTAGCTAGCCTTGCAGTCGATAGGAT TCAAAACTGTCAATTTCAAGACTTGCTCGATCCTTGCCTTGGGTACAATTCAGATGCAGAGGTCAAAAGAATGGCAATTCAAGTTGCAGTATTGGCTTTT CAGTGTCTGCAACAAGATAAAGAAATGAGACCCACCATGGATAAGGTTTTGGAGGAACTGAAGCAGATTAACGATGGGAATAACAGTGATAAAGAGGAGG ATCAAGACATCCAAGTATTAAATATCACAACATTGTTATCTTCATCGCCACAATTACATTCTGGTGACAGTACGCTTCTTAAGAAGCTCCCATCTTCACC CATATCAGTAACGCAACAGTGGGTTAGCAGTTGTTCAACTACTCCTAATGTCAGTAGCTAA
AA sequence Show only first row Show all	>Lus10022432 pacid=23171767 polypeptide=Lus10022432 locus=Lus10022432.g ID=Lus10022432.BGIv1.0 annot-version=v1.0 MPPPRWRITISSLLAAAITLMASAALEEEPTSRYQSCNPKSCGTGPNITYPFYILHNKTDYCGLRGFGIRCQSGNPIYRTSAADYVIRDIAYDNQTFLLV NQQFISEQEASAAACPTPQQNYSFDRSSVEYSPFHANIYFFYGCNNASSSSFQVPGRAFQLLPCNSSSDDNNNNKTYLVLNPSDEDLNWNRSLCRAMVYA PVQFNEEKELDSSSIKDVDYRKLLRDGFRLKWVGLAGYHCADCRTSGGRCGFENGNSSCYCPDGTSHPTNCFNRGGLGIGVPATLMILLLACVYWRHRKR SQTPSSFASSNAYFKKSSKGDVQLEDANTCFGVPIFSYGELERATNHFDAERELGDGGFGTVYYGKLRDGREVAVKRLYEHNYKRVEQFMNEVEILTRFR HKNLVSLYGCTSRHSKELLLVYEFISNGTVADHLHGDRALSCPLMWPVRMSIAIETASALSYLHASDIIHRDVKTTNILLDSNFSVKVADFGLSRLFPND VTHISTAPQGTLGYLDPDYHRCYQLTNKSDVYSFGVVLIELISSMPAVDISRNRDEINLASLAVDRIQNCQFQDLLDPCLGYNSDAEVKRMAIQVAVLAF QCLQQDKEMRPTMDKVLEELKQINDGNNSDKEEDQDIQVLNITTLLSSSPQLHSGDSTLLKKLPSSPISVTQQWVSSCSTTPNVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	0	1
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	7.4	0.8822
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	7.9	0.8858
AT4G25030			unknown protein		Lus10036513 [exp]	9.1	0.8933
AT3G62260			Protein phosphatase 2C family ...		Lus10038058 [exp]	11.5	0.8699
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	13.6	0.8848
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	27.3	0.8505
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10035964 [exp]	38.5	0.8250
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	39.5	0.8681
AT3G53610		ATRAB8, AtRab8B...	RAB GTPase homolog 8 (.1.2.3)		Lus10003985 [exp]	39.6	0.8061
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	42.2	0.8637

Compare expression of checked genes

Lus10022432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.