Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00650 176 / 3e-50 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT3G22440 66 / 3e-11 FRIGIDA-like protein (.1) AT4G14900 48 / 2e-05 FRIGIDA-like protein (.1) AT5G16320 48 / 2e-05 FRL1 FRIGIDA like 1 (.1) AT5G27230 45 / 0.0001 Frigida-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016738 [exp] 958 / 0 AT4G00650 193 / 8e-57 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10043012 [exp] 486 / 1e-165 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10032514 [exp] 483 / 2e-154 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10042965 [exp] 73 / 3e-13 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10008744 [exp] 73 / 4e-13 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10002146 [exp] 72 / 8e-13 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10032466 [exp] 71 / 1e-12 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10006113 [exp] 63 / 4e-10 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10010560 [exp] 61 / 1e-09 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110066 [exp] 186 / 8e-54 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Potri.015G110132 [exp] 122 / 2e-30 AT5G48385 54 / 8e-08 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 95 / 3e-20 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.014G175200 [exp] 80 / 2e-15 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 79 / 3e-15 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 78 / 5e-15 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10022433 pacid=23171632 polypeptide=Lus10022433 locus=Lus10022433.g ID=Lus10022433.BGIv1.0 annot-version=v1.0 ATGGCGAAACCTCTGGTTTCTAATGCCGGCTCTCCTCTACAATCAACCAGTGTCCAGGTGAAGCTGGAAAGCGTTACAGAATCACAGCTTCAGCTCCAAT CTCAACCGTCGATGACCCATGTCAATTCCGAGCCACCCAAGGTTAATGAACTTCCTCACAGGTCCCCGACGTTTGAATCAGTAAACAGATTGTGCAATCT GTCGACTGCCATTCAAGAATTCAAGCGCAGGTACGATGAATTGGAAAAGCATCTCGATTCTATCCAGTCTTCCGTGGAGAGTCAGGAACAGTTGACAGCT AGGGACGTGGCAGTTCCGTCCAAGTGCGAGTTAATCAGTATTTGCGAGACGATGTGCGCCAGAGGTCTACGTAAGTATATTACTTCTCACCTCGACGAGG CTCAGAAGCTTCGTGAAGAAGTCCCGTTGGCGCTAAAGGCAGCTCCACATCCGGCCAAGCTCGTGCTGGATTGCATTGGAAGGTTTTATCTTCAAGGAAG CAGAGCTTTCTCCAAGGATTCCCCAATGATATCAGCAAGGGAAGCTTCCATTCTAGCTCTAGAATTGCTCCTCATGACAAGTGAGGATGGTGCAGTCCAA CTTGATGACCTAGACAGACAAGAGACGGTTCTAGCTGCAATGAATTGGAGAAAGAGGCTTGTACTAGAGGGTGGTATTCGTAAAGCTAGCGAAATCGATG CCAAGGGTTTGCTTCTATTCGTCGCGTGTTATGGAATTCCAAAGCCGTTTAAGAATGAGGACATTTGGGATTTAGTTATTGCTGGTAATGCTGGGCAGGT TGCTAATGCTCTCAAACGCTCCACTTCTCTTGTATCCAGAGTTGAAGATATCATACAAGAAGCTGTGAGCAGTGGACTGAAACAAAATGCCAAACTTGAG GCTGTGGACGTGGCATCTAAATTTGGGATCGATGACAAGTTTCCGGCTCAGATGCTTCTGACTGCATTCCTGGAGGAGTCCAAAGATGCGCATAAAAGGA AGATAAGAGAAGCTTATAATTCGCCTACACAGCTGAAACTAGCAAATGAGCGCCATTTGACTGCTCTGAAATCGGTGATGAACTTGCTCAAGGAGCTTAA CCTTGATTCGTTGAAGGTAGTTCCTGGATGGAGATTTGCAGAGGAAATAGCCACGTTGGAGAAAGAAAATTCTGCTCTAAGCAGAACCATTTTAGAAAAG GTGAGGATGAAGACGAAAGCCGATGAGAATGACTACTTAGATAAGAGCAATCCAGCAATCAAACGTCCGCGAGTTAGTGGTCAAATCTCTAATCTAATGT CTTCCCCAGGCGTTGGGTTATATGAAAAGAATGCTCCAGCCTACATCACGGACAGCAGGAGTCCATGCCTAGGGGTGCTCTCATCTTATGGAGACACATA TCCTCCTTGTGCAGCATTGACATCCTATTCATCTGCTACTGGTGGATTTCTGCATGAAAATGCTGCAGGCGGAGGTTGTCTAACGCATGATGCTGGTGTC AATTTTCGGGGCGGCCCAACTACAGGTGGTTTGACTGGAAGCTTACCTACTAGTAGCGTTGGCTGGGAGGGCGTAGTCGATATGCCTGGTAAAAACAATG GATGGATTGGGAAAGCAGCAGCGGGACAGAGCTACCTTAGGAGCCGTACGTATGGGTTGTTTGGGCCTTCGCCGTTGATGGAAGGCTTTCCCGGATTGCC AAATTCCCCGCCACCTGTCGTAGGTGCAACCATAAACGCAGCAGAATTGTTTCGATTTGCAGATTCTGTAGTAGAAAGCGATTATAATGGCAAGGTTGGA GAGTATCATTAG
AA sequence Show only first row Show all	>Lus10022433 pacid=23171632 polypeptide=Lus10022433 locus=Lus10022433.g ID=Lus10022433.BGIv1.0 annot-version=v1.0 MAKPLVSNAGSPLQSTSVQVKLESVTESQLQLQSQPSMTHVNSEPPKVNELPHRSPTFESVNRLCNLSTAIQEFKRRYDELEKHLDSIQSSVESQEQLTA RDVAVPSKCELISICETMCARGLRKYITSHLDEAQKLREEVPLALKAAPHPAKLVLDCIGRFYLQGSRAFSKDSPMISAREASILALELLLMTSEDGAVQ LDDLDRQETVLAAMNWRKRLVLEGGIRKASEIDAKGLLLFVACYGIPKPFKNEDIWDLVIAGNAGQVANALKRSTSLVSRVEDIIQEAVSSGLKQNAKLE AVDVASKFGIDDKFPAQMLLTAFLEESKDAHKRKIREAYNSPTQLKLANERHLTALKSVMNLLKELNLDSLKVVPGWRFAEEIATLEKENSALSRTILEK VRMKTKADENDYLDKSNPAIKRPRVSGQISNLMSSPGVGLYEKNAPAYITDSRSPCLGVLSSYGDTYPPCAALTSYSSATGGFLHENAAGGGCLTHDAGV NFRGGPTTGGLTGSLPTSSVGWEGVVDMPGKNNGWIGKAAAGQSYLRSRTYGLFGPSPLMEGFPGLPNSPPPVVGATINAAELFRFADSVVESDYNGKVG EYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10022433 [exp]	0	1
AT3G55550			Concanavalin A-like lectin pro...		Lus10040276 [exp]	2.8	0.8197
AT3G52610			unknown protein		Lus10022699 [exp]	3.5	0.7922
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	3.6	0.8232
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	11.2	0.7934
AT4G28230			unknown protein		Lus10033724 [exp]	18.5	0.7790
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	22.1	0.7892
AT1G52420			UDP-Glycosyltransferase superf...		Lus10011469 [exp]	23.1	0.7570
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10000113 [exp]	23.9	0.7627
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	25.0	0.7617
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	25.0	0.7836

Compare expression of checked genes

Lus10022433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.