Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51060 1204 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G47910 1183 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G07390 1092 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 1048 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 978 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 936 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT1G19230 814 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT4G11230 793 / 0 Riboflavin synthase-like superfamily protein (.1) AT5G60010 769 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 730 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043017 [exp] 1548 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 1537 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10029896 [exp] 1105 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 980 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10016740 [exp] 959 / 0 AT5G47910 638 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032308 [exp] 944 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 900 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 890 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 858 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111600 [exp] 1445 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 1429 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G159800 [exp] 1256 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 1222 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 1127 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 967 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 956 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 848 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 757 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 724 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10022434 pacid=23171700 polypeptide=Lus10022434 locus=Lus10022434.g ID=Lus10022434.BGIv1.0 annot-version=v1.0 ATGCCGTTGACTGTTCTCTCCTTCTCCATTACCCGCCACTTCTCCCCTCCGCCTCCGCGTCTACACTGTGTGTGTATGTGTATATATACAAATACACATT GGCTTCTTCAGACCACCAAAGCCAAGTCCAACAAAGCAGGCCGACGCCTTCTGATCTTCCCTCTCTGTAATTCTACTTTTCTTCTCACGTTTTGCTTCGC AATTCTCAGATTTCCTCGGGATATTGAGAATATGAGTACAGAAGAACAGCATCCGCCATTGGAGACGGAGCTGGTGGGAGTTGACAGGGTCCCGAACAGC GGGCCATTAAGCGGTCCACTGAACAAAAAAGGTGGAAGAAAGAGCGCCAGGTTCAACATACCTGCTGATCAGACTAGCTCGTCCGACCAGCAGTATGTTG AGATCACGCTCGATCTCAGAGATGATTCGGTGGCCGTTCACAGCGTTAAAGCTGCCAACGGCACGGAGGAAGATCCCGAGATGACACTTCTAGCCAAAGG CTTGGAGAAGCGCACGGCTTCCAATCTTGGTTCATCTGCGATGAGAAGTGCTTCTGCTCGAATCCGTCAAGTTTCTCAAGAGCTGAGGCGGCTCACTTCC ATTAACAAAAGGCCCACGGGTCGGCTTGACAGGACCAAGTCGGCAGCGGCTCATGCTCTCAAGGGTCTCAAGTTCATCAGTAAGGCCGACGGTGGCTCCG GATGGGTTGCTGTGGAGAAGAGGTTCGATGAAATCACCGATGGGATGCTTCCTCGCTCTCGCTTTGGGGAATGCATTGGAATGAAGGAGTCAAAGGAATT CGCCTTGGAGTTGTATGATACTCTCGCTAGGAAGAGAAACATTCAGAGGGATTCAATCACCAAGTCTGAGTTGAAGGACTTCTGGGATCAGATTTCCAAC CAGAGCTTCGATTCCAGGCTCCAGACTTTCTTTGACATGGTTGATAAGGATGCAGATGGTAGAATTACTGAAGAGGAAGTTAAGGAGATCATTACTCTCA GTGCATCTGCAAACAAGCTTTCGACTATCCAAAAACAAGCAGAGGAGTATGCTGCTTTGATTATGGAAGAATTGGATCCTGAACACCATGGATACATCAT GATAGAGAGCTTGGAAATGCTGTTGCTGCAAGGACCAAGCCAGTCTGTTAGAGCAGCAGACAGCAAGAACCTGAGCAAACTGTTGAGCCAGAAGCTAAAG CCGACACTGGACGAGAACCCAATCAGTAGATGGTTGAGAGACGCGAAATACTTTTTATTGGACAACTGGCAGAGAGTTTGGGTGATGGCTCTGTGGATTG GGGTAATGGCTGGCCTATTTGCTTATAAGTACGTGCAATATCGCAACAGAGCTGCATACGAGGTCATGGGCGCTTGTGTCTGCCTAGCTAAAGGTGCTGC CGAAACACTCAAACTAAATATGGCTTTGATTCTGCTTCCTGTCTGCCGGAACACAATCACATGGCTCAGGAATAAGACCAAACTAGGACTTGCTGTTCCT TTTGATGACAACCTCAACTTTCACAAGGTTATAGCGGTGGCAATAACAATTGGAGTAGGCATCCATGGCATATCCCATTTGGCCTGTGACTTTCCTCGTC TTCTAGATGCAAGCGATGAGAAATGGGAACTTATGGAGCCATTTTTTGGAGACCAGCCGTCGAGCTACTGGCATTTCGTTAAGTCAAAGGAAGGGGTCAC TGGGATTGTGATGGTTATTCTGATGGCGATAGCTTTCACACTTGCCACTCCTTGGTTCAGGCGAAACAAGCTCAATTTGCCACCTTTGTTGAAGAAGCTA ACAGGATTCAATGCCTTTTGGTACTCCCACCATTTGTTTGTCATTGTCTACACTCTGCTTGTAGTTCACGGTTACTATCTCTACCTCACCAAGGAATGGT ACAAGAAGACAACCTGGATGTACTTGGCTGTTCCAGTAGTTCTTTATGGCAGCGAGAGGTTGACAAGGGCATTGAGGTCCAGCATCAAGGCAGTTACCAT AAGGAAGGTGGCAATTTATCCTGGAAACGTGTTGGCACTTCACATGTCAAAGCCTAGTGGGTTCAGATACAAGAGTGGGCAGTACATGTTTGTGAATTGT GCTGCAGTGTCTCCATTTGAATGGCACCCATTCTCCATCACTTCTGCTCCCGGAGATGATTATTTGAGCGTTCACATCAGAACACTGGGTGACTGGACGA GGCAGCTCAGAACTGTTTTCCAAGAGGTGTGTCAACCACCGGCGACAGGGAAGAGTGGACTTCTCAGAGCGGATGGATTTCAGGGAAACAACAATCCTGA TTTTCCAAAAATATTGATCGACGGACCATATGGAGCTCCGGCACAAGATTACAAACAATACGAAGTTGTTCTGCTAGTGGGACTGGGGATAGGAGCCACA CCCATGATCAGCATTGTCAAGGACATAGTAAACAACATGAAGGCCATGGATGACTTGGAGAACGGCGCAACAACTGCACCCAGTGCCGCGTCGCCTCCTT CAATAAGCCACCAATCTGGCTCGTCCTCACACTCCAACAGTAAGAGGAAAGAACAGTTCAGGACTAGAAGGGCCTACTTTTATTGGGTAACAAGGGAGCA AGGCTCCTTCGACTGGTTTAAAGGTGTGATGAACGAGGTTGCTGAATTGGATCAAAACCAAGTGATAGAGCTCCATAACTACTGCACCAGTGTGTACGAA GAGGGAGATGCACGTTCTGCACTCATTGCTATGCTCCAATCCCTTCACCACGCTAAAAACGGGGTTGACATTGTCTCGGGGACACGTGTCAAATCCCACT TCGCCAAACCCAACTGGCGTAACGTTTTCAAGCAAGTTGCCGTTCACCATCCTCATTCCCGAGTTGGGGTGTTTTATTGTGGGGCACCTGGATTGACAAA GGAGCTCCGCAACTTGGCTCTGGATTTCTCGCATAAGACCACCACCAAGTTTGATTTCCACAAGGAGAACTTCTAA
AA sequence Show only first row Show all	>Lus10022434 pacid=23171700 polypeptide=Lus10022434 locus=Lus10022434.g ID=Lus10022434.BGIv1.0 annot-version=v1.0 MPLTVLSFSITRHFSPPPPRLHCVCMCIYTNTHWLLQTTKAKSNKAGRRLLIFPLCNSTFLLTFCFAILRFPRDIENMSTEEQHPPLETELVGVDRVPNS GPLSGPLNKKGGRKSARFNIPADQTSSSDQQYVEITLDLRDDSVAVHSVKAANGTEEDPEMTLLAKGLEKRTASNLGSSAMRSASARIRQVSQELRRLTS INKRPTGRLDRTKSAAAHALKGLKFISKADGGSGWVAVEKRFDEITDGMLPRSRFGECIGMKESKEFALELYDTLARKRNIQRDSITKSELKDFWDQISN QSFDSRLQTFFDMVDKDADGRITEEEVKEIITLSASANKLSTIQKQAEEYAALIMEELDPEHHGYIMIESLEMLLLQGPSQSVRAADSKNLSKLLSQKLK PTLDENPISRWLRDAKYFLLDNWQRVWVMALWIGVMAGLFAYKYVQYRNRAAYEVMGACVCLAKGAAETLKLNMALILLPVCRNTITWLRNKTKLGLAVP FDDNLNFHKVIAVAITIGVGIHGISHLACDFPRLLDASDEKWELMEPFFGDQPSSYWHFVKSKEGVTGIVMVILMAIAFTLATPWFRRNKLNLPPLLKKL TGFNAFWYSHHLFVIVYTLLVVHGYYLYLTKEWYKKTTWMYLAVPVVLYGSERLTRALRSSIKAVTIRKVAIYPGNVLALHMSKPSGFRYKSGQYMFVNC AAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLRTVFQEVCQPPATGKSGLLRADGFQGNNNPDFPKILIDGPYGAPAQDYKQYEVVLLVGLGIGAT PMISIVKDIVNNMKAMDDLENGATTAPSAASPPSISHQSGSSSHSNSKRKEQFRTRRAYFYWVTREQGSFDWFKGVMNEVAELDQNQVIELHNYCTSVYE EGDARSALIAMLQSLHHAKNGVDIVSGTRVKSHFAKPNWRNVFKQVAVHHPHSRVGVFYCGAPGLTKELRNLALDFSHKTTTKFDFHKENF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	0	1
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	1.4	0.9004
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	2.8	0.8510
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	5.0	0.8242
AT1G31130			unknown protein		Lus10018940 [exp]	9.8	0.8112
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	13.7	0.7828
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	15.0	0.8345
					Lus10018550 [exp]	16.7	0.7973
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	18.7	0.8092
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	19.3	0.7914
AT4G10265			Wound-responsive family protei...		Lus10004297 [exp]	19.5	0.7714

Compare expression of checked genes

Lus10022434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.