Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50790 275 / 4e-92 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT3G48740 233 / 1e-75 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G13170 231 / 1e-74 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G23660 227 / 3e-73 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G50800 219 / 3e-70 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT4G25010 212 / 1e-67 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 198 / 2e-62 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G15920 155 / 6e-46 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 141 / 1e-40 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT1G21460 141 / 2e-40 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016742 [exp] 540 / 0 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10032553 [exp] 427 / 1e-151 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1) Lus10043190 [exp] 320 / 5e-110 AT5G13170 204 / 5e-65 senescence-associated gene 29 (.1) Lus10008861 [exp] 232 / 1e-75 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10023249 [exp] 231 / 3e-75 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 229 / 3e-74 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 228 / 1e-73 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10015754 [exp] 226 / 7e-73 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10003143 [exp] 225 / 2e-72 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101400 [exp] 321 / 2e-110 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 313 / 2e-107 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 310 / 6e-106 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 303 / 2e-103 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 238 / 1e-77 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 236 / 6e-77 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.001G060900 [exp] 222 / 2e-71 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.019G030500 [exp] 205 / 4e-65 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 164 / 3e-48 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 158 / 5e-47 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10022436 pacid=23171723 polypeptide=Lus10022436 locus=Lus10022436.g ID=Lus10022436.BGIv1.0 annot-version=v1.0 ATGGGGCTCCACTTCTCTTTGGTGTTCCTTTTCGGACTATTAGGGAATGCAATATCGTGCCTGGTATGCTTGGCGCCACTGCCGACGTTCTACCAAATAT GGAAGAAGAAAACAAGCCAAGGCTACCAATCAATCCCGTACGTCATAGGCATGTTCAGCGCCATGATGTGGCTCTTCTACGCCATATTCGCCACCGACGC CATGCTGCTCATCACCATCAACGTTTTCACCTTCGTCATGCAAACTATCTACATTGCCATCTTCCTCTTCTACGCCACGAAGCCCGACAGGCTCACTACC ATCAAGCTCGTCTGCTTCTTGAACGTCGTCGGATTCGGAGCCATCTGTACCGTCACCTTGGCCTTCACCCACGGCCTCCTCCGTGTCAAGGTCCTCGGCT GGTTTTGCATGATCTTCTCCCTCTGTGTCTTCGTCGCTCCTCTCGGCATCGTGAGGAAAGTGATAAAAACAAAGAGCGTGGAGTTCATGCCGATCTCCCT CTCGTTCTTCCTCACCCTCAGCGCCGTCATGTGGTTCATGTACGGATTCCTCAAGAAAGACCCTTACGTCGCTGTTCCCAACATTCTTGGACTCACGTTC GGAGTCCTCCAGATGGTGTTGTACTTGATCTACCGTAAGAGCACGCCTATGACCAAAAACAATAAGGCCGCGGCGGCGGAAGAGGTACCGGCGGTGGTGA TCGACGTAGGAAAGCTGGCGGCGGGGGCAGATCAGCATAATAACCAAGTGGTCCCTGTGGAACGAGCAGTAGTGCCACAGCAGCTAGTAATCCAGCTAAT GAACGTAGTGGCAGTTGCGGAACAAGAAGAAGAAGAAGAAGAAGAACGAATGAGGAAGAGCAAGAACAAAGAGACGGTACACAGAGATGCAGTTGCTGTG GCATGA
AA sequence Show only first row Show all	>Lus10022436 pacid=23171723 polypeptide=Lus10022436 locus=Lus10022436.g ID=Lus10022436.BGIv1.0 annot-version=v1.0 MGLHFSLVFLFGLLGNAISCLVCLAPLPTFYQIWKKKTSQGYQSIPYVIGMFSAMMWLFYAIFATDAMLLITINVFTFVMQTIYIAIFLFYATKPDRLTT IKLVCFLNVVGFGAICTVTLAFTHGLLRVKVLGWFCMIFSLCVFVAPLGIVRKVIKTKSVEFMPISLSFFLTLSAVMWFMYGFLKKDPYVAVPNILGLTF GVLQMVLYLIYRKSTPMTKNNKAAAAEEVPAVVIDVGKLAAGADQHNNQVVPVERAVVPQQLVIQLMNVVAVAEQEEEEEEERMRKSKNKETVHRDAVAV A

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10022436 [exp]	0	1
AT2G34140	DOF	AtDof2. 3	Dof-type zinc finger DNA-bindi...		Lus10001896 [exp]	6.3	0.8144
AT1G14730			Cytochrome b561/ferric reducta...		Lus10034427 [exp]	7.8	0.8498
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10024029 [exp]	11.1	0.8234
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	14.7	0.7456
AT5G42200			RING/U-box superfamily protein...		Lus10021842 [exp]	15.8	0.5994
AT2G37925		COPT4	copper transporter 4 (.1)		Lus10021108 [exp]	18.8	0.8200
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	19.0	0.8098
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	20.6	0.6896
AT5G55380			MBOAT (membrane bound O-acyl t...		Lus10003655 [exp]	20.8	0.6141
AT5G22870			Late embryogenesis abundant (L...		Lus10016161 [exp]	26.5	0.8191

Compare expression of checked genes

Lus10022436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.