Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51140 497 / 2e-174 Pseudouridine synthase family protein (.1.2) AT4G24972 160 / 2e-46 TPD1 tapetum determinant 1 (.1) AT1G32583 157 / 4e-45 unknown protein AT3G52260 84 / 3e-17 Pseudouridine synthase family protein (.1.2.3) AT3G19440 63 / 3e-10 Pseudouridine synthase family protein (.1) AT1G76050 59 / 3e-09 Pseudouridine synthase family protein (.1.2) AT1G78910 59 / 4e-09 Pseudouridine synthase family protein (.1) AT4G32080 46 / 4e-06 unknown protein AT1G05835 46 / 8e-06 PHD finger protein (.1) AT4G32090 45 / 9e-06 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016744 [exp] 238 / 8e-76 AT4G24972 172 / 5e-55 tapetum determinant 1 (.1) Lus10001911 [exp] 128 / 4e-35 AT1G32583 157 / 5e-50 unknown protein Lus10023503 [exp] 72 / 2e-13 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3) Lus10017250 [exp] 65 / 8e-11 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10002811 [exp] 64 / 1e-10 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10026289 [exp] 59 / 4e-10 AT4G32090 72 / 5e-17 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10042384 [exp] 57 / 8e-10 AT4G32110 81 / 1e-20 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10040385 [exp] 61 / 1e-09 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3) Lus10027863 [exp] 57 / 3e-08 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101300 [exp] 587 / 0 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2) Potri.012G102900 [exp] 181 / 5e-54 AT1G32583 160 / 2e-50 unknown protein Potri.015G101000 [exp] 176 / 4e-52 AT1G32583 157 / 5e-49 unknown protein Potri.006G017600 [exp] 150 / 2e-42 AT1G32583 187 / 5e-61 unknown protein Potri.008G105600 [exp] 112 / 8e-29 AT4G24972 106 / 2e-29 tapetum determinant 1 (.1) Potri.010G246900 [exp] 96 / 2e-23 AT1G32583 104 / 3e-29 unknown protein Potri.010G246300 [exp] 79 / 2e-17 AT1G32583 85 / 1e-21 unknown protein Potri.008G042000 [exp] 84 / 3e-17 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.010G145501 [exp] 69 / 4e-14 AT1G32583 74 / 1e-17 unknown protein Potri.002G016800 [exp] 70 / 1e-12 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10022437 pacid=23171762 polypeptide=Lus10022437 locus=Lus10022437.g ID=Lus10022437.BGIv1.0 annot-version=v1.0 ATGGGTATTCCGTACGCCGTTCGGCTTCTCACCACCACCGTGGTTGGGATGGTGGTGCTAGTTCTTCTCCTATCAGCTGGTGCAATGGAGAACAAGGAGG AGCCCAACAGAATATGGGGAGAAAAGTGTACAACGAGTGACATAGTGATTAATCAGGGGCAAACATCTCCTCTCCCCAGCGGGATACCAACATACACTGT AGAGATAACCAACCTCTGTGTCAGCGGCTGCGACATCACAAGGATTCATATAACATGCGGATGGTTCAGCTCTGCACGTCTCATCAATCCAAGGGTGTTC AAGCGCCTTGGCTACAATGACTGCCTTGTCAACGATGGCAAGCCTTTGCTCAACGGAGCTACACTTTCCTTTCAGTACGCCAACACTTACTCTTACCCTC TATCCGTCTCTTCTGTGGGTATGAAGAAGCGGAAGAGAGACGAGGAAGGAGGAAGAGGAAGTCAGGAAAAAGACATGGAAATTGTCTGGCAAACGCCGGC AAATCCGCCGGAGATGAAGGATTATATCATTCGAAACGGGAGGCGCCATGTGAAGCCTTACTACTTCGAGTTCGTCTGTCATGTCAAGAATCGTTGGAAC GGGAAGACAATTGTTGATTTGTTCGCGAAAGAATTCAAAGGAAGACCGTACGATTACTACGTTAGTGCTGTGAAGAGTGGACGGATTCAGGTTGATGGAG AGACGGTTCCAGTCTCTTATGTGGTCAAAACATCTCAAAAGATAAGCCACTTTGTACACAGGCATGAACCGCCAGTCATGGCCTGCGATATTTCTGTTCT GCAAGAAGAACCTGATGTTGTGACCATTTCAAAGCCACCAACTGTACCTGTTCATCCCTGTGGTCAATATCGTAAGAACACTGTTGTTGGCATTCTTCAA GCGGAACATGATCTAGCACCTTTGTTTCCTATTCACCGACTAGATAGACTAGTCTCAGGACTTCTAATCTTGGCCAGAACTGCATTAAAGGCTGACCTTT TCAGGCAAGAGATTGAAGCTGGATTAGTGCATAAACAGTATGTAGCGAGGGTTGTTGGTGTATTCCCTGAAGATGAGCAAGTTGTTGATGTCAACATAAA TTATAATGCTCGGGAAGGATGGAGCACAACGGAGGTTGGTGAGTTGAGTGGCACAACCCCCGCTAAAGGAAAGCATGCCTGCACAAAGTTTACTCGCATT AGTACCAATGGGAGTCATAGTATTGTACGATGCGAACCTATAACTGGCCGAACTCATCAAATACGTGTTCATTTGCAATACACGGGCCATCCCATAGCAA ACGACTTCCTGTACTTGAATAAGCAAGAGACCAACCGTGGGTATGATGGAATGAGTGCTGAAAGAGCTGCTCGTCGTTCCAGTGCTCCGACATCTGAAAG CAAAACTGGCAGTGAATATGAATCCAACTTCGGAGAAGATTTTGAAATTGATCCCTTGTGTACCAATTGTCCAGGCTTGATGCCAAAAGGATATGATGGA TACGAAGAAGAAGCTCTGTGGCTTCATTGCGTCCAATATTCTGGGCCACAATGGCTATATCAGTGTCCATATCCTGACTGGGCTACTCTATGA
AA sequence Show only first row Show all	>Lus10022437 pacid=23171762 polypeptide=Lus10022437 locus=Lus10022437.g ID=Lus10022437.BGIv1.0 annot-version=v1.0 MGIPYAVRLLTTTVVGMVVLVLLLSAGAMENKEEPNRIWGEKCTTSDIVINQGQTSPLPSGIPTYTVEITNLCVSGCDITRIHITCGWFSSARLINPRVF KRLGYNDCLVNDGKPLLNGATLSFQYANTYSYPLSVSSVGMKKRKRDEEGGRGSQEKDMEIVWQTPANPPEMKDYIIRNGRRHVKPYYFEFVCHVKNRWN GKTIVDLFAKEFKGRPYDYYVSAVKSGRIQVDGETVPVSYVVKTSQKISHFVHRHEPPVMACDISVLQEEPDVVTISKPPTVPVHPCGQYRKNTVVGILQ AEHDLAPLFPIHRLDRLVSGLLILARTALKADLFRQEIEAGLVHKQYVARVVGVFPEDEQVVDVNINYNAREGWSTTEVGELSGTTPAKGKHACTKFTRI STNGSHSIVRCEPITGRTHQIRVHLQYTGHPIANDFLYLNKQETNRGYDGMSAERAARRSSAPTSESKTGSEYESNFGEDFEIDPLCTNCPGLMPKGYDG YEEEALWLHCVQYSGPQWLYQCPYPDWATL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	0	1
AT2G17695			unknown protein		Lus10041839 [exp]	1.0	0.9343
AT4G14385			unknown protein		Lus10021187 [exp]	2.0	0.8918
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	3.0	0.8878
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	3.7	0.8778
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10028925 [exp]	4.9	0.8656
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	4.9	0.8807
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	5.3	0.8599
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10037306 [exp]	5.8	0.8357
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10036865 [exp]	7.6	0.8398
AT5G19370			rhodanese-like domain-containi...		Lus10026105 [exp]	8.7	0.8479

Compare expression of checked genes

Lus10022437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.