Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24970 645 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G50780 627 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 530 / 1e-179 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36290 379 / 5e-122 CRT1 compromised recognition of TCV 1 (.1) AT4G36280 376 / 3e-121 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT1G19100 375 / 3e-120 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36270 256 / 7e-77 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016745 [exp] 1157 / 0 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10041578 [exp] 570 / 0 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 372 / 1e-119 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10039959 [exp] 345 / 9e-109 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10042100 [exp] 338 / 3e-104 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 287 / 7e-89 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 254 / 1e-75 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102800 [exp] 718 / 0 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G100900 [exp] 681 / 0 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 577 / 0 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 389 / 1e-125 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.015G079400 [exp] 365 / 1e-116 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G089000 [exp] 364 / 2e-115 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 80 / 2e-15 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10022438 pacid=23171695 polypeptide=Lus10022438 locus=Lus10022438.g ID=Lus10022438.BGIv1.0 annot-version=v1.0 ATGCGGCCGCCGGAGTCAAGGGACAACGGAAGTCTAATGGTGAATTGTCAGAACTCCAAACAGTTTTGGAAAGCCGGAGACTACGAAGGAGAAGGAGGAA CGGTTGGCGATTGCGAGGTTTCTTCTGGTAATTCCCTCACTCCTAACATCATGCATTTCGTTTTAGGTGGTATGGAGCGTGTTAGGGTTCATCCCAAGTT CTTACATTCCAATGCAACCAGCCACAAGTGGGCTCTTGGAGCCTTTGCCGAACTTTTGGACAATTCATTGGATGAGGTCTGTAGTGGGGCGACACTAGTG AAGATAGACATGCTGAAAAATAAGAAAGATGGTAGCCCAATGCTATTGATTGAAGACGATGGGGGTGGGATGGATTCAGATAAAATGCGGAAGTGCATGT CTTTAGGTTTTTCTGCGAAGAGCAAAATCGATAGCACCATTGGACAGTATGGCAATGGGTTCAAGACTAGTACCATGAGGCTTGGTGCTGATGTTATTGT ATTTTCTCGATGTTCTGGGCAAAGTGGCAAGCGACCTACCCAGAGCATCGGACTGCTATCATATACGTTCCTGCGGAGTACAGGAAAAGAGGATATTGTA GTTCCAATGCTTGCCTATGAAAGAGTAGGAAATAAATCAAACAGGATTTCTCCACTTTCTGATGTTGATTGGAATAGCACTGCAAAAACTATTCTTCAGT GGTCTCCATTTGCGAGCGAGACTGATCTTCTGCATGAGTTGGATTTGTTACCAGATCATGGAACTCGCATAATAATATACAATCTTTGGGAGGATGACGA AGGATTCTTGGAGCTTGATTTTGATTCCGATCCTCATGACATACAACTCCGAGGTGTTAATCGGGAAGAGAAAAACATACAAATGGCTCAGGAGTATCCC AATTCTAGGCACTTCCTCACCTATAGACATTCTTTAAGGAGTTATGCTTCAATTCTCTATCTCAGAATTCCTCCTAGCTTTCGGATCATCCTTCGAGGAA TAGACGTTGAGCACCACAATATAGTAAATGACATGATGATGTCTGAGGAGGTGACATATCGGCCACAGGCTAGTGTTGATGGGGTGATGAAGGACTATAG TAGTATAACTGCTGTTGTTACTATTGGATTTGTCAAGGATGCAAAGTACCACATTGATGTTCAAGGGTTCAATGTCTATCACAAGAATCGACTTATCAAG CTTGTGCTCGTTTGTCATCTGCATGCTCTGTTTTATCTTCCCGCCTTCACGATTCTGGAACTAATATGCTGCCTTCAGCCATTTTGGAGGCTCTGGAATG CTGCAGGAAGCGATGGTCGTGGAGTTATAGGTGTCTTAGAAGCCAATTTTGTTGAACCAGCCCATGATAAGCAGGGTTTTGAACGTACAACTGTTTTGGC AAGGCTTGAGTCTCGTCTAATACAAATGCAAAAGACTTACTGGGGTTCGAACTGTCACAAGATTGGCTATGCTCCGAGACGTAATAAGAAAGCGGCAAGT GAAGAAGCAGAAGCAACCTCCTCACTTGGTCAGAACTTGGGAGGAAAAGCATCAGAAAGATCCGGGAAAGATGTGCAAGATGGGAAGCAACATTTTTCAG GGAAAGGAAACAGTGTAACAAGGTCTCAAGTTAAATCTAGAAAAGTATTGGAATCTAATGAACCTACATCTCCCACCGAGGATCCAAATGAAAGTAACAT GCCAAGTAGTAGCACTCCTACCAGGAAATCATCTGGTACACTGTTGCATGAGACTCCGTATTTCACACGCTCAGGAGATACAAGATCTCGTAATAAAGGC GCCACTCCAGCTAGAGAATATGTTCCACCTGCTGCCATACATACCCAGGAGAAGGTTGTTGTGGAGAATCTAGGTGAAGATGTCCAACCACGCGTCGATA CAGAAGCTAATGTTGAGCGGCTGAAGCAAGAGAACCGCGAACTGAAGGAAAGATTGGAGAGGAGGGAGGGAGAGCTTCGATTGATGAGTTTGAAGTGCCA GAAGTGCAGTGCTCTAAAGACAAAGTTGGATAAAGCAGAGCAGAAGATTGATGATCTGAACAAAGAACAAGAGAGTTTAATTGAAATCTTCTCAGAGGAG AAGGAGAGGAGGGAGAAGGAAGAGGATAATTTGAGGAAGAAGTTGAAGGATGCATCGAAAACGATCCAAGAATTGCTAGACAAAGTTAAGTTGCTCGAGA AAATCTAA
AA sequence Show only first row Show all	>Lus10022438 pacid=23171695 polypeptide=Lus10022438 locus=Lus10022438.g ID=Lus10022438.BGIv1.0 annot-version=v1.0 MRPPESRDNGSLMVNCQNSKQFWKAGDYEGEGGTVGDCEVSSGNSLTPNIMHFVLGGMERVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCSGATLV KIDMLKNKKDGSPMLLIEDDGGGMDSDKMRKCMSLGFSAKSKIDSTIGQYGNGFKTSTMRLGADVIVFSRCSGQSGKRPTQSIGLLSYTFLRSTGKEDIV VPMLAYERVGNKSNRISPLSDVDWNSTAKTILQWSPFASETDLLHELDLLPDHGTRIIIYNLWEDDEGFLELDFDSDPHDIQLRGVNREEKNIQMAQEYP NSRHFLTYRHSLRSYASILYLRIPPSFRIILRGIDVEHHNIVNDMMMSEEVTYRPQASVDGVMKDYSSITAVVTIGFVKDAKYHIDVQGFNVYHKNRLIK LVLVCHLHALFYLPAFTILELICCLQPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLESRLIQMQKTYWGSNCHKIGYAPRRNKKAAS EEAEATSSLGQNLGGKASERSGKDVQDGKQHFSGKGNSVTRSQVKSRKVLESNEPTSPTEDPNESNMPSSSTPTRKSSGTLLHETPYFTRSGDTRSRNKG ATPAREYVPPAAIHTQEKVVVENLGEDVQPRVDTEANVERLKQENRELKERLERREGELRLMSLKCQKCSALKTKLDKAEQKIDDLNKEQESLIEIFSEE KERREKEEDNLRKKLKDASKTIQELLDKVKLLEKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	0	1
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	1.7	0.9046
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	4.5	0.8583
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	5.5	0.8475
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	5.8	0.8799
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10015115 [exp]	8.3	0.7959
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	10.2	0.8715
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	11.8	0.8444
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	12.5	0.8408
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	13.3	0.8437
AT5G35560			DENN (AEX-3) domain-containing...		Lus10033443 [exp]	13.5	0.8014

Compare expression of checked genes

Lus10022438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.