Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48710 322 / 2e-103 DEK domain-containing chromatin associated protein (.1) AT5G63550 248 / 2e-74 DEK domain-containing chromatin associated protein (.1.2) AT5G55660 179 / 1e-47 DEK domain-containing chromatin associated protein (.1) AT4G26630 165 / 8e-43 DEK domain-containing chromatin associated protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025759 [exp] 708 / 0 AT3G48710 328 / 1e-103 DEK domain-containing chromatin associated protein (.1) Lus10035905 [exp] 706 / 0 AT3G48710 322 / 3e-103 DEK domain-containing chromatin associated protein (.1) Lus10016746 [exp] 541 / 0 AT3G48710 263 / 1e-81 DEK domain-containing chromatin associated protein (.1) Lus10035904 [exp] 104 / 1e-24 AT1G67120 44 / 1e-04 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100700 [exp] 419 / 2e-139 AT5G63550 245 / 6e-74 DEK domain-containing chromatin associated protein (.1.2) Potri.012G102500 [exp] 301 / 8e-94 AT5G63550 248 / 3e-75 DEK domain-containing chromatin associated protein (.1.2) Potri.011G093200 [exp] 195 / 6e-54 AT4G26630 199 / 6e-55 DEK domain-containing chromatin associated protein (.1.2) Potri.001G367400 [exp] 192 / 1e-52 AT5G55660 206 / 3e-57 DEK domain-containing chromatin associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022439 pacid=23171688 polypeptide=Lus10022439 locus=Lus10022439.g ID=Lus10022439.BGIv1.0 annot-version=v1.0 ATGGCGAGCGAAACCCTAGAGGAGAACACTAAGCCGGAGGAGGAAGCTCCTCTTGCGAGCAAAGAGGATCTCAAGCCCGAACAACTGGAGAAACAGAAAG CTGACGAGGGTATTCACGAAAAGCAAGAGGACGTGGACGAGAAGATGGAAGACAGGCACGACGAAGTTGACGCAGAGATGAAAGATGAGGACGAGGAAGT GGACGCCGCCGATACTAAGAGCGGTCCGGACGAAGAGATGAAAGACAAGCCAGAGGAAGTGGAGACCGAGGTGAAAGCCAAGCTGGAGGAAGAACAAGTG AAAAATAAGGAGGATGGGGATGGAATCAAGGAAGATGATAAACAAGAAGATACAGACGAACAGCCGAGTCAAGAAAGCAAGGAGGAACCCAGTTCTGAAA ATCCTCCTGTACAAGGAAATGAGGAAGAGCCTGCCGAGGAAGCTGGCCGAGGCAAAGAGGAGGAGGAGGCTGAGAAAGATCTCGACCAGGAGAATGGCCA GGACGAAGGGGAAGGTGAGGATGTTGAAGAGGAAACAGAAGAAGAAGATGCGATGAAAAATAAGCAAGTTGGCACTGCCAAGGAACAGGAGAAGACTCCT GAAGCCACCGAGAAGAAAGCAACTGTCACCCCTAGCAGTGATCGCCCAACTAGGGAGCGGAAGATGGTAGAAAGATACTCTGTTCCCGAGCATCAAAGAT CCACTGTCAAAAAGACCCTGTCGATAGAAAAGGGCCGTGGGACAGCCCTGAAGGATATTCCCAATGTGGCCTTCAAGTTGTCGAAGAGAAAATCTGATGA GACTTTGCATGTCCTTCACACTATACTTTTTGGAAAGAAAGGGAAGGTTCAAAGTATGAAGAGAAATATTGGAAGATTTTCTGGCTTCGTTTGGACTGGG AATGAGGAAAAACAACAGGAAAAACAAAAGTCAAGAGTTAAGGAAAAGCTTGACAAGTGTGTTAAGGAAAAGTTACTAGACTTCTGTGATGTACTCAATA TTCAAGTAACTAAAGCCACCGTGAAAAAGGAAGAGCTCAGTGCAAAAATCTTGGAGTTCTTGGAATCTCCTCATGCAACAACTGATGTTATGCTTGCTGA CAAGGAACAGAAAGTCAAGAGGCGGAGGTCAATGACTGTGAAAAATTCTAGTCCTGGGGAAGCATCAGCTACACCAGCTAAGAGACAAAAACAGACATCC CAGTCTGAGGAAAAACAAACCCCCTCTTCCAAAGGTGACGAAGAGGAAGATGATGATAAGGTTGAATCAGAAGATCTGAATGATCACTCTCAAGATGATG ATGATGAGGAGGCTCTTCCTCATAAAGAGGAGAGCGATGAGGATGAGGACAGATTGGTGGAAAAGAATGACGATCCAAAGGAGGAAACACCAACCCAGAA GTCATCAAGCAAAACTGTTAAGGATACTTCAGGTTTAAAAGGCAAGGAGAAAACCACACCTCGCAAGAGCAGTGCCACCACTAAGGCCGTGAAGATTACA TCAAGATCTAACAAGTCATCTGCTCCTTCAGCAAAACCAGGTCCAGATACTGATGTAGGTTCTGGTTCAGTTTCTAAATCCAAGAGACCTGCATCAAGGA AACGCAAGGCTGAAGAGCAAGATATTTCAGCAAAGGAAATCACTAAGAAAAACTTGGCAGGCAAGTCAACTGGAAAAGTTTCTGCAAAAGATCAAGGGAA GGGCAAATCAAGCAAGAAGGCCAAGACTGAACCCACAAGAGAAGAGTTGCATGCAGTCGTTGTTGACATCCTGAAAGAAGTTGATTTTAATACAGCAACT TTGTCTGATATTCTCAAGAAACTTGGTAAACACTTCAACGTAGATCTAATGCACAGAAAAGCAGAGGTGAAGGATGTTATAACAGAGGTTATTAATAACA TGTCGGATGAGGATGAAGATGAAGAAGAAGATGATGAAGGTGATGATAATGCTGAGGCGGGAGGGGATGATGGAGATGATGATTAG
AA sequence Show only first row Show all	>Lus10022439 pacid=23171688 polypeptide=Lus10022439 locus=Lus10022439.g ID=Lus10022439.BGIv1.0 annot-version=v1.0 MASETLEENTKPEEEAPLASKEDLKPEQLEKQKADEGIHEKQEDVDEKMEDRHDEVDAEMKDEDEEVDAADTKSGPDEEMKDKPEEVETEVKAKLEEEQV KNKEDGDGIKEDDKQEDTDEQPSQESKEEPSSENPPVQGNEEEPAEEAGRGKEEEEAEKDLDQENGQDEGEGEDVEEETEEEDAMKNKQVGTAKEQEKTP EATEKKATVTPSSDRPTRERKMVERYSVPEHQRSTVKKTLSIEKGRGTALKDIPNVAFKLSKRKSDETLHVLHTILFGKKGKVQSMKRNIGRFSGFVWTG NEEKQQEKQKSRVKEKLDKCVKEKLLDFCDVLNIQVTKATVKKEELSAKILEFLESPHATTDVMLADKEQKVKRRRSMTVKNSSPGEASATPAKRQKQTS QSEEKQTPSSKGDEEEDDDKVESEDLNDHSQDDDDEEALPHKEESDEDEDRLVEKNDDPKEETPTQKSSSKTVKDTSGLKGKEKTTPRKSSATTKAVKIT SRSNKSSAPSAKPGPDTDVGSGSVSKSKRPASRKRKAEEQDISAKEITKKNLAGKSTGKVSAKDQGKGKSSKKAKTEPTREELHAVVVDILKEVDFNTAT LSDILKKLGKHFNVDLMHRKAEVKDVITEVINNMSDEDEDEEEDDEGDDNAEAGGDDGDDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	0	1
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	1.0	0.9392
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	1.4	0.9219
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	8.5	0.8850
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	8.9	0.8963
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10022780 [exp]	9.4	0.8853
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	11.0	0.9146
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	12.6	0.8793
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10034908 [exp]	13.3	0.8287
AT5G02570			Histone superfamily protein (....		Lus10040850 [exp]	14.4	0.9162
AT3G12530		PSF2	PSF2 (.1.2)		Lus10002696 [exp]	15.2	0.8935

Compare expression of checked genes

Lus10022439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.