Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63540 431 / 2e-143 BLAP75, ATRMI1 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) AT5G19950 62 / 8e-10 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016747 [exp] 687 / 0 AT5G63540 297 / 5e-94 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) Lus10043254 [exp] 49 / 8e-06 AT5G19950 285 / 4e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10019397 [exp] 49 / 9e-06 AT5G19950 285 / 2e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100200 [exp] 550 / 0 AT5G63540 468 / 3e-158 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) Potri.018G073100 [exp] 49 / 6e-06 AT5G19950 274 / 6e-87 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08585 [flax] [poplar] RMI1_N RecQ mediated genome instability protein
Representative CDS sequence Show only first row Show all	>Lus10022440 pacid=23171708 polypeptide=Lus10022440 locus=Lus10022440.g ID=Lus10022440.BGIv1.0 annot-version=v1.0 ATGCTCAGAAGACGACTGGTTCTCTCCGACGATGAGGACGAAGAGCAGGAAAATAGTCAGCCTCCGCAATTTGAAGCAACCGTTTCCGAAGCTGAAATTG AAATTGATATGCAGCCATCTCTTACTCACCAAAACCCTAACCGTATCGAGCCAGTAGACTCAATCTCCGACGACGAGTTTCTTGATATATTAGACGATGA TAATCACGTGTCTCCTCCGTCGGAGACTGTAACTGATGATACCTTAGAGAATCAGCGGCCGCGACCGCAACTTGGGGCGGCGGTGGTGGAAGAGAGCTCC GGGTGCCCAGTGGGGGATATTTTGATGAGAATGGGATTGAGTTTAAAAAGAGAATGGCTAGATTCTTGTCTTGCTGGGCTCAATAGCTCGGTTCAACACC TTGATTTAAAGGCCAAGGCGAAGCATTGCTTCAATAAGTTCTTAATGTCGGACATGAATTACTGCGGCAAGGGCGTGCTTCCGCCTAATGTTGGTTCGAT GCATCTTGTTGATCTCCCCGGGCCATTCGTATTGCAGGTTGATGAGATTGTTAATATGAGTGCTCCCCTCAAAGGCAGGTATCAAGATACACATTGTGGG CTTAAGAGGTGCCTTAAGTTATCCATGACGGATGGTGTTCAACGTGTGTTTGCCATAGAGTATATGCCTATCGACAGTCTTAAAGTTTTGGCTCCTGCAG GATTCAAGGTTGCTATTTGTAATGTGCATGTGCGACGTGGACTCCTGATGCTGGTACCTGAAGTCATTACAATTCTAGGAGGAGTGGTGGAGGAGTTGGA GGCAGCACGAATTCGTCTTGTTGCAGACGTGAATAAGCCGCCTAGGGGAAAGAGATCAAGGGCAGGAGTTATCCCTCCTTTGGCTACAAGGGGCACCATG GCTGCATGGCCCCTAACTAGTGCCACTGATCCTGGGAGCACAAACGACTCTGCAAATGCTCCTGGGAGTACTAATCCAGGCCACGTCAATGATACTCCCA ACATTCCTCAACGCCTTAACCTTTCTGTTAATGTTGGTGGAGGCAGAAATGACCCTGGCAATGTTTCTAGATCTGCAACTCCATCCACCGTGCAGTCTTC AGTTCCCTATTCTGTTAGCGCTGGTCACAACACTGATCATGTCAATTTTTCTAGATCTACCGCTCGCTGCACTGTACAGTCTGCAATGCCTTGCTATGGT AGGTCAATCAACATTTCTAGATCCACAACTTCTTCTATCACACAGTCCTCGATACTCTCTCAATCAGATGACCGAGGGAGAGCAGAACCAATTGTTTCCG ATGTATCAGATAGAGTTGTTTCTGAGATTGAAGGGATGCATATCGATCTATCTCCTGTCCACGAGGATACCCATATGGCTGATGAACCTGAACATCCCCT TATTTTATCTGGAAACAGAGAAATCCCTTTTACCTACTTAGCTAGCTTGTCAGCAAAATGGGCTGCCCAAAGGGTAAAATCCTCTCTTCAAGCGAGGATT AAGTGTCTCATCACTGCTGTGAAGGGCTTCCAATACAGGAATGTGGAAAGATATGATTTACGGCTCTATGTAGACGATGGAAGCCTCATCTCTGAGATCA TGGTTGATCATTCTGTAGTGCATAAATATATAGGTTGTTCTCCAGCAGAGGCTACTTCTGCTATTTCCTCTACGGATGCAAGTATAGTTGCTGATATGAA GAATACGTTGACTCAGTTCCAAATATTTCTACTCAACTTCGAGGGTACAATGCTTGTAGAGATGAATGAAAATTCCCCTCGTCCAGTTGCCATCAAAGTA AAGCAAGGGGTCCCTGCTACCGATGCATGGCTGCTTATGAGAAGACTCAAGTCTTATGCTCCAACGGGTCATCATACCTCAGAGACCATTACCATTTCTC CATGA
AA sequence Show only first row Show all	>Lus10022440 pacid=23171708 polypeptide=Lus10022440 locus=Lus10022440.g ID=Lus10022440.BGIv1.0 annot-version=v1.0 MLRRRLVLSDDEDEEQENSQPPQFEATVSEAEIEIDMQPSLTHQNPNRIEPVDSISDDEFLDILDDDNHVSPPSETVTDDTLENQRPRPQLGAAVVEESS GCPVGDILMRMGLSLKREWLDSCLAGLNSSVQHLDLKAKAKHCFNKFLMSDMNYCGKGVLPPNVGSMHLVDLPGPFVLQVDEIVNMSAPLKGRYQDTHCG LKRCLKLSMTDGVQRVFAIEYMPIDSLKVLAPAGFKVAICNVHVRRGLLMLVPEVITILGGVVEELEAARIRLVADVNKPPRGKRSRAGVIPPLATRGTM AAWPLTSATDPGSTNDSANAPGSTNPGHVNDTPNIPQRLNLSVNVGGGRNDPGNVSRSATPSTVQSSVPYSVSAGHNTDHVNFSRSTARCTVQSAMPCYG RSINISRSTTSSITQSSILSQSDDRGRAEPIVSDVSDRVVSEIEGMHIDLSPVHEDTHMADEPEHPLILSGNREIPFTYLASLSAKWAAQRVKSSLQARI KCLITAVKGFQYRNVERYDLRLYVDDGSLISEIMVDHSVVHKYIGCSPAEATSAISSTDASIVADMKNTLTQFQIFLLNFEGTMLVEMNENSPRPVAIKV KQGVPATDAWLLMRRLKSYAPTGHHTSETITISP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10022440 [exp]	0	1
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	1.4	0.9500
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	2.0	0.9447
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10017724 [exp]	5.7	0.9280
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	6.5	0.9372
AT1G69070			unknown protein		Lus10019174 [exp]	10.4	0.9389
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	10.8	0.9371
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	11.5	0.9389
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	12.7	0.9376
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	13.4	0.9381
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	16.2	0.9334

Compare expression of checked genes

Lus10022440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.