Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48590 271 / 1e-91 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G63470 266 / 4e-89 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT1G56170 191 / 3e-60 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT1G54830 188 / 3e-59 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT1G08970 182 / 8e-57 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT5G50480 150 / 1e-44 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 140 / 8e-41 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1) AT5G50490 119 / 1e-32 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50470 119 / 3e-32 CCAAT NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1) AT5G38140 99 / 4e-25 CCAAT NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016750 [exp] 344 / 1e-119 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10041221 [exp] 195 / 1e-61 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 194 / 3e-61 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10029939 [exp] 192 / 4e-60 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 191 / 1e-59 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10024515 [exp] 117 / 1e-32 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 113 / 5e-31 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10030832 [exp] 57 / 9e-10 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Lus10026780 [exp] 58 / 2e-09 AT5G19490 189 / 1e-58 Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097400 [exp] 275 / 8e-93 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 262 / 9e-88 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.007G070900 [exp] 194 / 4e-61 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.005G094900 [exp] 193 / 2e-60 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.008G203500 [exp] 189 / 4e-59 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 187 / 4e-58 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 184 / 2e-57 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G035800 [exp] 183 / 2e-56 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.017G120000 [exp] 122 / 1e-33 AT1G56170 127 / 1e-36 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.003G124500 [exp] 114 / 1e-31 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10022444 pacid=23171719 polypeptide=Lus10022444 locus=Lus10022444.g ID=Lus10022444.BGIv1.0 annot-version=v1.0 ATGGATGCCAACTCCCACCAGCAACAGCAACAACAACAGCAATCCTCCTCCAGTTACCAGTCCTCAATCCCCACTACTCCCACCCCACCGCCTCCTCCTC CTCCTCCTCCTGCTGCTCCCTCCTCCGCTGCTGCTGCATCCGCGGGTCCTCCTCCTCACCACCTCCTTCAACAACAACAACACCAGCTCCAGATGTTCTG GTCTTACCAGCGCCAGGAGATTGAGCAGGTCAATGACTTCAAGAACCACCAGCTCCCTCTCGCCCGGATCAAGAAGATCATGAAGGCTGACGAGGATGTC CGCATGATCTCCGCTGAGGCCCCCATTCTCTTTGCCAAGGCTTGCGAGCTCTTCATCCTTGAGCTCACCATCCGCTCCTGGCTCCATGCCGAGGAGAGCA AGCGCCGCACCCTCCAGAAGAACGACATTGCCGCTGCCATTACCAGGACCGATATCTTCGATTTCCTCGTCGATATCGTCCCCCGTGACGATAACAAGGA GGATGCGGGTCTCGCTGCCGGCACCGTTCCTGCCACTGCAAGTGGCGTCCCTTATTATTATCCTGCTGCTCCTCCTCCTGGCATGATGATTGGTAGGCCC GCCCTCGACCCTTCCGGCGTCTACGTCCAGCCTCCCTCCCAGGCCTGGCAGTCCGCTTGGCAGACCACCTCCACCGATGATGTCTCCTATGCCAGCGGAG GCACTACCGGCCAATCCAATCTCGATGGACAAGGCTCGAAATTACAGTTTGAGATTCGCCTAGGCTTGAGATGCATGCTGAAGCTCAGATCTATGATCCC CGGAATTCTACCTGTCACGATGGGTTTCCTCGTCGACGTTCCTCACTACATTTGTCGCCTTGGTAACTACAACGATCACCCTGATAAGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10022444 pacid=23171719 polypeptide=Lus10022444 locus=Lus10022444.g ID=Lus10022444.BGIv1.0 annot-version=v1.0 MDANSHQQQQQQQQSSSSYQSSIPTTPTPPPPPPPPPAAPSSAAAASAGPPPHHLLQQQQHQLQMFWSYQRQEIEQVNDFKNHQLPLARIKKIMKADEDV RMISAEAPILFAKACELFILELTIRSWLHAEESKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDNKEDAGLAAGTVPATASGVPYYYPAAPPPGMMIGRP ALDPSGVYVQPPSQAWQSAWQTTSTDDVSYASGGTTGQSNLDGQGSKLQFEIRLGLRCMLKLRSMIPGILPVTMGFLVDVPHYICRLGNYNDHPDKKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	0	1
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	1.0	0.9591
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	2.4	0.8924
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	2.4	0.9296
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10008623 [exp]	5.7	0.8685
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	6.9	0.9059
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	7.2	0.8401
AT2G32840			proline-rich family protein (....		Lus10003918 [exp]	8.5	0.8826
AT1G32580			plastid developmental protein ...		Lus10011789 [exp]	9.2	0.9064
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	9.5	0.9044
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	11.4	0.8712

Compare expression of checked genes

Lus10022444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.