Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 323 / 7e-107 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 89 / 3e-20 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT4G33070 54 / 5e-08 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01320 54 / 5e-08 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 53 / 5e-08 PDC3 pyruvate decarboxylase-3 (.1) AT1G68890 53 / 8e-08 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) AT5G54960 50 / 9e-07 PDC2 pyruvate decarboxylase-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016751 [exp] 358 / 2e-120 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 308 / 2e-101 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 262 / 1e-88 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 135 / 7e-37 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10028503 [exp] 82 / 2e-17 AT5G17380 916 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10009141 [exp] 79 / 1e-16 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10002217 [exp] 52 / 2e-07 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10003384 [exp] 51 / 3e-07 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10030915 [exp] 51 / 3e-07 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097200 [exp] 321 / 2e-106 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.012G098300 [exp] 320 / 7e-106 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 87 / 2e-19 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.010G135500 [exp] 59 / 1e-09 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) Potri.016G120100 [exp] 47 / 5e-06 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 46 / 1e-05 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 46 / 2e-05 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 45 / 3e-05 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Representative CDS sequence Show only first row Show all	>Lus10022445 pacid=23171765 polypeptide=Lus10022445 locus=Lus10022445.g ID=Lus10022445.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCTAATTCCTCCGCCGCCATCGCTAACACACCCAAGCCTTCCTCCGCCACCAGATCTCTCATCCCTCTTCACCGTCCTTCTTTCTCATTCT CGTCCTTGAGGCCGCCATCTCATTGCCCTTCTATCCACATCTCTTGCTCCTCCTTCCTTCCCAATGCTACCACCGCTGCCGCCACCACCGCCGCCAACAC TGCTTCTCCTCTTCCTGTCACCTCCCCTCCTTCCAGATTCTCCCCAGACGAGCCCCGTAAAGGCGCTGACATCCTCGTCGAAGCTCTCGAGCGACAAGGG GTTATAGATGTGTTCGCCTATCCTGGCGGCGCCTCAATGGAGATCCACCAGGCGCTCACTCGCTCCAGAACAATCCGAAACGTCCTCCCCCGCCACGAGC AAGGCGGAGTTTTCGCCGCCGAAGGCTATGCTCGTTCATCCGGTAAGCCTGGCATCTGTATTGCTACCTCTGGCCCTGGTGCAACCAATCTCGTCAGTGG CCTTGCCGATGCCCTCCTCGACAGTATCCCCTTAGTCGCCATTACCGGCCAGGTCCCCCGCCGCATGATTGGTACCGACGCCTTTCAGGAGACTCCTATT GTTGAGGTAACTCGTTCCATTACCAAGCACAACTACCTGGTGCTTGATGTGGATGATATACCTAGGGTTGTCAAAGAGGCTTTTCATTTGGCTACTTCTG GCCGTCCTGGCCCTGTGTTGATTAACGTTCCTAAGGATATTTAG
AA sequence Show only first row Show all	>Lus10022445 pacid=23171765 polypeptide=Lus10022445 locus=Lus10022445.g ID=Lus10022445.BGIv1.0 annot-version=v1.0 MAAANSSAAIANTPKPSSATRSLIPLHRPSFSFSSLRPPSHCPSIHISCSSFLPNATTAAATTAANTASPLPVTSPPSRFSPDEPRKGADILVEALERQG VIDVFAYPGGASMEIHQALTRSRTIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSIPLVAITGQVPRRMIGTDAFQETPI VEVTRSITKHNYLVLDVDDIPRVVKEAFHLATSGRPGPVLINVPKDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	0	1
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	1.0	0.9001
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	3.0	0.8887
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	4.5	0.8653
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	5.8	0.8918
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	6.0	0.8747
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	7.5	0.8386
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	9.5	0.8199
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	10.0	0.8281
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022446 [exp]	11.0	0.8230
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	15.3	0.8224

Compare expression of checked genes

Lus10022445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.