Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48560 671 / 0 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016751 [exp] 781 / 0 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 613 / 0 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035207 [exp] 607 / 0 AT3G48560 800 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032041 [exp] 526 / 0 AT3G48560 565 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10035359 [exp] 223 / 1e-72 AT3G48560 219 / 3e-69 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032037 [exp] 94 / 2e-22 AT3G48560 96 / 3e-23 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10009141 [exp] 55 / 6e-08 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097200 [exp] 692 / 0 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.012G098300 [exp] 691 / 0 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.004G094600 [exp] 61 / 9e-10 AT5G17380 904 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10022446 pacid=23171751 polypeptide=Lus10022446 locus=Lus10022446.g ID=Lus10022446.BGIv1.0 annot-version=v1.0 ATGAAGTTGCCTGGTTACTTGTCCAGGTTTCCTAAAAATCCTTGCAGGCCCAATTTGGAGGTCATTACTAGGTTCATTTCCGAGTCTAAGAAACCTGTGC TGTACGTAGGGGGAGGATGTTTGAATTCCAGCAACGAATTGAGCAGGTTTGTTGAGCTAACTGGTATTCCTGTGGCAAGCACTTTAATGGGGCTTGGATC TTATCCCGTCGGGGATGACCTTTCATTGCAAATGCTTGGCATGCATGGAACCGTGTATGCAAATTATGCTGTGGAACACAGTGATTTACTCTTGGCATTT GGAGTGAGGTTTGATGATCGTGTGACAGGGAAGCTGGAAGCTTTTGCTAGCAGAGCTAAGATTGTTCATATTGATATTGATCCTGCTGAGATTGGGAAGA ACAAGCAGCCTCATGCGTCGGTTTGCGGAGATGTGAAGTTGGCGTTGCAGGGGATAAATGAAATTTTGGAAACAGAGGAAGGGATGAGTAAGATGGATTT TAGTGCCTGGAGGGCAGAGTTGAATGAACAGAAGTTGAAGCATCCATTGACTTACAAGACTTTCGGAGAAGCCATTCCTCCTCAGCATGCTATCGAGGTC CTTGATGAACTGACTAACGGGGAAGCAATAATTAGCACTGGGGTTGGTCAGCATCAGATGTGGGCTGCTCAGTATTACAAGTACAAGAAACCGCGCCAGT GGTTGACATCAGGAGGACTCGGGGCTATGGGTTTTGGACTGCCTGCTGCAATGGGGGCTGCTGTTGCTAACCCAGGTGCTGTTGTCGTTGATATTGACGG TGATGGGAGTTTCATGATGAATGTTCAAGAGCTGGCAACTATCCGGGTGGAGAATTTACCGGTGAAGATGATGCTGTTGAATAATCAGCACTTGGGTATG GTGGTACAGTGGGAAGATCGTTTCTACAAAGCGAATAGAGCTCACACATATCTAGGGGATCCAGCAAGGGAATCTGAGATATTCCCGAACATGTTGAAGT TCGCTGAAGGTTGTGGTATTCCTGCTGCTCGTGTAACAAGAATAGCAGACCTTAGAGCTGCAATTCAGACAATGTTGGACACTCCAGGACCTTACTTGTT GGATGTGATTGTGCCTCATCAAGAGCATGTTCTGCCCATGATCCCTAGTGGTGGTTCATTCAAAGACTTGATAACTGAGGGAGATGGGAGAATCAAGTAC TAG
AA sequence Show only first row Show all	>Lus10022446 pacid=23171751 polypeptide=Lus10022446 locus=Lus10022446.g ID=Lus10022446.BGIv1.0 annot-version=v1.0 MKLPGYLSRFPKNPCRPNLEVITRFISESKKPVLYVGGGCLNSSNELSRFVELTGIPVASTLMGLGSYPVGDDLSLQMLGMHGTVYANYAVEHSDLLLAF GVRFDDRVTGKLEAFASRAKIVHIDIDPAEIGKNKQPHASVCGDVKLALQGINEILETEEGMSKMDFSAWRAELNEQKLKHPLTYKTFGEAIPPQHAIEV LDELTNGEAIISTGVGQHQMWAAQYYKYKKPRQWLTSGGLGAMGFGLPAAMGAAVANPGAVVVDIDGDGSFMMNVQELATIRVENLPVKMMLLNNQHLGM VVQWEDRFYKANRAHTYLGDPARESEIFPNMLKFAEGCGIPAARVTRIADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGSFKDLITEGDGRIKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022446 [exp]	0	1
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10003317 [exp]	1.0	0.8905
AT3G58610			ketol-acid reductoisomerase (....		Lus10022849 [exp]	2.4	0.8834
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	4.5	0.8432
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	5.5	0.8573
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10016641 [exp]	6.2	0.7811
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	7.7	0.8400
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	7.7	0.8455
AT4G23930			Late embryogenesis abundant (L...		Lus10032397 [exp]	8.3	0.8028
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10000093 [exp]	10.2	0.8194
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	11.0	0.8230

Compare expression of checked genes

Lus10022446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.