Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79190 1156 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016753 [exp] 2389 / 0 AT1G79190 1350 / 0.0 ARM repeat superfamily protein (.1) Lus10001243 [exp] 722 / 0 AT1G79190 344 / 1e-107 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067700 [exp] 1367 / 0 AT1G79190 1410 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022448 pacid=23171637 polypeptide=Lus10022448 locus=Lus10022448.g ID=Lus10022448.BGIv1.0 annot-version=v1.0 ATGGAAAACAATCGTATGCTATACCAAAGCAGCGTCTTCTCCCGGCTAAAACCTTGCTGTCTAGAGCTCCTTCAGTTTCTCCAAAACCCTAACAAAGTTT CTTCCTCTGCACTACCTTCACTGCTCCAACTCCTCCGCAGCTGTTCCTCTAGCGATTTACAGTCTTTCTTCGACTACACCTCGTTCCCGTTGCTGCTCCT ACTTGACGCTGCTGTCGGTTGCAGATCGTCCAATAAGGATGATCCTCAGAAGTATTCGGTGACCTTGAATCCGCAACAATCGGCTGATAATGTTAGTGAC AAAGTGGCGGAAGGTGTGCTGCAGTGCTTGGAGGAGCTTCTCCAGAAGTGTCGTTTCGGATCGGTCGACCAGATGGTTGTTGTGATGAAGAAATTGACTA ACGCCGCGTTGCTGTCTCCATCAGAGGCTTCTGAAGAATTTCGCGAGGGCGTAGTGAAGTGTTTAAGGAATTTACTTCTGGGCTTAAGTCCGTGTGCAGA TGAAACTTGTTCATGCAGACAAACGAATGGTATGCCAGCATTGTTGGAGAATGGGGAGCTCCACTGGTCTCTATCCCAGCCTTTGAGTTATGATACAGAA GTGAAGGAGTGTGTGATTGCATTTCTCCAGTCACATGCCGCTTCTGCCGCTGTCGGACACTTGCTGTCACTGCTACTCAAGGCAGCAGACAATGAGGCTG CACGAGGACATCGAGGCAGTGCAAGGCTCCGTGTTGAAGCCTTTTATACCTTACGTGTGCTTGTCGCCAAGGTCGGTACTGCAGATGCATTGGCTTTCTT TTTACCTGGTGTTGTCAGCCAATTTTCAAAAGTTTTGCATGGCTCAAAAACTATGATGAGTGGAGCAGCTGGAAGCACAGATGCTACTGATCAAGCAATA AGAGCGCTGGCAGAGTATCTAATGATAGTGCTTGATGGCGTTTCCAATGTAAGCTCCATTATAACAGAGAATCTCCCAGCTGATGCAAGTTCGGACAGTA ATAGATCTGGCGAGTCCATATTGGATCAACTCCGTCACTTACCAGTCAGCAGTCAGGGGCATATGAAGAATATGGCTGATGAGTCAATAGTAGATCTGGA AAACTCAGTAACTCATGTGTCTGAATACGAAATGAGTAGGGGCATGAGAAGAAGCGGGTACACAGGATCATTGCATGTTGAGCGAACAAGAGATTGGTTA AGGCAAACTTCAGCGCATGTGGTTAAATTGTTGAGTGCCACATTTCCACATATCTGCGTTCATCCTGTGAATAAGTTGAGACGGGGACTACTGGCTGCCA TCAAAGGATTAATATTAAGGTGCAGTTCTACTTTGAAGGAAAGCAGATCTATGCTACTTGAGTGCCTTTTGGTCTTGGTTGTTGATGACTCTGAAGATGT TGCTGGATCTGCCAAGGAGTTCCTTGAGTTCTTATTCTCATCGTGCGGAAACCATTCAGTAAAAGCTGATATTGGTCCGATTTTTGCTAGGATAATTGAA AAGCTTCCAAAGGTAGCACTTGGTGGTGAGGAATTTGGCCTCCTAAGAATGATGAACGGTGGTCCGAGTTCTGTATATGCTGGCGCTCTTGATAAGGACA CATTGACAAGGACATCATCCATTAGTTTTCTTCCATCTATTATGGAGTTGAGATGTGGTTCTCTTGCCTCTAGTTACCAGAATCTCAAAGATCAGTCTCT TGTTAATGTGTCCGATACAAGTTTTATTCATAGGAAACAAATTGAGTATCCTTTTGAAACTCTCGGGCACAGTTATGAACTTCCACGAATACCACCTTGG TTTGTCCATGTGGGTTATAAGAAGCTATATGACACACTGGCTGGAGTACTCAGACTAGTAGGCTTATCTTTGTTAGCAGTTACTCTCTTGTTGCTAGACC ACCATCAAGGGCATATGGTCGTGATTACAGATATACCACTAGGTCATATACGCAGATTAGTTTCTGAGGTTCGCTCCAGAGATGCAAATGAAGGCTGGCA GTATTGGTATAATGGAACTTGGGCTGGAAAGTTAATACGTCAGGCGAGCACTACGGCATGCATTCTAAATGAGATGATATTTGGGGTATCTGATAAAGCA GTTGAAGGTATTACTATGTTGTTTCAAAATTCCAGGGAGAAGGGGGGAGAAGTTGTACAGTCTGATGTGAGAGGTTCTGGTGCTTGGCCGCCTTCTCTTC AGAACAGAGAAAGTATGGCTTCTGTCTGGAAGGCCTCACAACAAACTGTCAAAAAGAGTCACTTAATTGATTGCATTGGGAGAGTCTTACATGAGTATCT ATCATCTGAATTGTGGAATTTACCCATAGATCACAGGGATCTAGTGGGACAATGTGACGAGGAAGTTGAAGTTAACTTGCACTTATTCCAAGACGCAGCT GCGCTACAACAGGTTGCTATTGATGGAATTGGCATCTTTGCGACCTGCCTTGGAAATGATTTCTCCTCCAGTGGGTTTCTTCACTCTACTCTTTATCTGC TGCTTGAGAACCTCATATCCGCTGATATCCAAGTCAGAACTGCTTCTGATACTGTCCTGCATGTTCTTTCTGCTACCTGTGGCCATCCAACAGTTGGGCA GTTGGTCTTGGCCAATGCCGATTATGTTGTAGATTCAATATGTCGGCAATTACGTCATTTGGATCTTAACCCACAAGTCCCGAACGTGCTTGCTTCTATG CTTTCTTATATTGGAGTGACTAATAAAGTACTGCCCCTTTTGGAGGAAACGATGGGCTCTGTTTCAAGGGAACTAGAGATTCTTAGCAGACATCAGCACC CAGAGTTGACCACTCCTTTCCTAAAGGCCATAGCACAAATTTGCAAGGCATCACAATCTGAGGCTTCATCACTGCCATGTAATGCAGCATTGTATCTTAA GGATGTGAAGTCCAAAGTCTCAAGGTTGGAGAAGAAAGTGAGAGCTCAATCCAATAAAGGTCCAACATCATCTTGTGACGACAATGTTGGTACTTGGCAT GGAGAATCAGGAAAAAGATTGATGAGTGGTATCTTACTTGTAGAACAATGGGAGGGTATAATCTTCAAGTTGAATGAATCTAAAAGGTACAGACGTACAG TTGGATCTATTGCTGCTTCCTGCTTATTATCCGCGACTCCTCTACTTGGTTCAATGGAGCAAGCGGCATGCCTGGTGGCATTGGATATAGTTCAGGACGG CATTGCATCCCTGGCAAAAGTGGAAGAAGCTTATCAATATGAGAAAGAAACCAAGGAAGTAATCGAAGAAGTAGTGCAAGCATATTCAACTTATCAGCTT CAGGATACTATTGATGCGGCCGATGAAGGGATTGACGAGAACAGATTGCTTCCAGCAATGAATAAGATATGGCCATTCTTGATTTCTTGCGTTCGTAACA AAAATCCTGTGGCAGTTAGGAAATGTGCAACTGTGATAGCCAATGTGGTGCAGACATGTGGAGGGGACTTCTTCACACGGCGGTTCCACACTGATGGTCC ATGCTTGTGGAAGCTTCTTTCCTCATCTCCGTTTCAGAGGAAGCCATTATTGAAAGATGAAAGGACACTACGACTTCCTTATAGGAGCAATTTAGCAGCA AAGGAGGAGGAATCAATGGCTGAAACGTCCAACTTGAAGGTCCAGGCTGCGGTGCTGAAAATGGTTGCTGATTTGGCACGAAGCAAGAGGAGTTGTAGGG CATTGGAACTGGTACTGAAGAAGGTGAGCGGTCTAGTTGTTGGGATAGCTTGCAGCGGCGTCATTGGGCTTCATGATGCCTCGGCGAGTGCTCTTGATGC GCTTGCGACTATGGACCCCGATCTGATATGGCTTTTAGTAGCCGATGTTTACTACTCATTGAAGGAGGAGAATGCCACATACCCGCCCAGCAGCTGCTCA CGTTTGTGGGAAATATCTAGGCTTTTACCACCGCCTGTTTCACCCAAGGAGTACCTTTATGTGCAGTACGGAGGGCAAAGCTATGGTTTTGACATCAACG TGGCTTCAGCGGAGAAAGTATTCCGTTCATTGGCTTTTCCAGGACAACACAAGTTGTGA
AA sequence Show only first row Show all	>Lus10022448 pacid=23171637 polypeptide=Lus10022448 locus=Lus10022448.g ID=Lus10022448.BGIv1.0 annot-version=v1.0 MENNRMLYQSSVFSRLKPCCLELLQFLQNPNKVSSSALPSLLQLLRSCSSSDLQSFFDYTSFPLLLLLDAAVGCRSSNKDDPQKYSVTLNPQQSADNVSD KVAEGVLQCLEELLQKCRFGSVDQMVVVMKKLTNAALLSPSEASEEFREGVVKCLRNLLLGLSPCADETCSCRQTNGMPALLENGELHWSLSQPLSYDTE VKECVIAFLQSHAASAAVGHLLSLLLKAADNEAARGHRGSARLRVEAFYTLRVLVAKVGTADALAFFLPGVVSQFSKVLHGSKTMMSGAAGSTDATDQAI RALAEYLMIVLDGVSNVSSIITENLPADASSDSNRSGESILDQLRHLPVSSQGHMKNMADESIVDLENSVTHVSEYEMSRGMRRSGYTGSLHVERTRDWL RQTSAHVVKLLSATFPHICVHPVNKLRRGLLAAIKGLILRCSSTLKESRSMLLECLLVLVVDDSEDVAGSAKEFLEFLFSSCGNHSVKADIGPIFARIIE KLPKVALGGEEFGLLRMMNGGPSSVYAGALDKDTLTRTSSISFLPSIMELRCGSLASSYQNLKDQSLVNVSDTSFIHRKQIEYPFETLGHSYELPRIPPW FVHVGYKKLYDTLAGVLRLVGLSLLAVTLLLLDHHQGHMVVITDIPLGHIRRLVSEVRSRDANEGWQYWYNGTWAGKLIRQASTTACILNEMIFGVSDKA VEGITMLFQNSREKGGEVVQSDVRGSGAWPPSLQNRESMASVWKASQQTVKKSHLIDCIGRVLHEYLSSELWNLPIDHRDLVGQCDEEVEVNLHLFQDAA ALQQVAIDGIGIFATCLGNDFSSSGFLHSTLYLLLENLISADIQVRTASDTVLHVLSATCGHPTVGQLVLANADYVVDSICRQLRHLDLNPQVPNVLASM LSYIGVTNKVLPLLEETMGSVSRELEILSRHQHPELTTPFLKAIAQICKASQSEASSLPCNAALYLKDVKSKVSRLEKKVRAQSNKGPTSSCDDNVGTWH GESGKRLMSGILLVEQWEGIIFKLNESKRYRRTVGSIAASCLLSATPLLGSMEQAACLVALDIVQDGIASLAKVEEAYQYEKETKEVIEEVVQAYSTYQL QDTIDAADEGIDENRLLPAMNKIWPFLISCVRNKNPVAVRKCATVIANVVQTCGGDFFTRRFHTDGPCLWKLLSSSPFQRKPLLKDERTLRLPYRSNLAA KEEESMAETSNLKVQAAVLKMVADLARSKRSCRALELVLKKVSGLVVGIACSGVIGLHDASASALDALATMDPDLIWLLVADVYYSLKEENATYPPSSCS RLWEISRLLPPPVSPKEYLYVQYGGQSYGFDINVASAEKVFRSLAFPGQHKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	0	1
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	1.0	0.9293
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	2.8	0.9126
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	3.5	0.8980
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	4.2	0.8940
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	5.2	0.9104
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	5.7	0.9060
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	6.5	0.8808
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	8.7	0.9044
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	9.8	0.8771
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	10.2	0.8970

Compare expression of checked genes

Lus10022448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.