Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 1216 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1214 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G09870 1211 / 0 CESA5 cellulose synthase 5 (.1) AT4G39350 1189 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G05170 1075 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G44030 1044 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT4G18780 985 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G17420 774 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G32410 756 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 755 / 0 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003526 [exp] 1227 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 1226 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1215 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10012198 [exp] 1145 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1144 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10006161 [exp] 1120 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10039607 [exp] 1086 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007296 [exp] 955 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 901 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G027600 [exp] 1322 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G194200 [exp] 1223 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.007G076500 [exp] 1182 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G087500 [exp] 1179 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.001G266400 [exp] 1165 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.002G066600 [exp] 1162 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.009G060800 [exp] 1120 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.016G054900 [exp] 1098 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1032 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.011G069600 [exp] 984 / 0 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10022449 pacid=23171687 polypeptide=Lus10022449 locus=Lus10022449.g ID=Lus10022449.BGIv1.0 annot-version=v1.0 ATGGAGGCCACAGGGGGTAACTTGGTTGCAGGGTCTCACCAGAGAAATGAACTCACTGTCATCAGGAGTGAACTTCCTTCTAGAATCGGCGATGATGAGG ATGAGTTGGAGGATGAGTACTTAAGCGGGCAGAGATGCCGAATCTGCGGGGACGAGATAGGAGTGAATGGTGATGGAGAAGTGTTTTTGGGGTGCAACGA GTGTGCATTTCCTATATGCCGAGCTTGTTATGATTACGAGCGAAGGGAAGGCGGTCAAGTTTGCCCTCGTTGCAAGACCAGATTCAAACGTCTCAAAGGG TGTCCCAGAGTGCATGGAGATGAAGAAGAAGAAGATGTTGACGATTTGGAAAACGAGTTCAATTTTGATCATCGTCACTTTGGATCATTAGTGGACAACT ACAATATGCCTTTTTTCCCTTCACAGTTCCCTCTCCTAACTGATGTTCCAATGGAGGATACTTGTAATGCGTACCAACATGCTTTGGTCCCTTCGTTTGT GAATGCTTCTGTTATCGGATCCTCCTTGCCAAGTAGTCCGATTCCTGGCTCCGTTCAAGTGAGACCCATGGATCCTTCCAAGGACTTGGCAGTTTATGGG TATGGAAGCATTGCTTGGAAGGAGAGGATGGAGGCTTTTAGACAAGAAAAGTTGCAGGTTATTAAAAACGAAGACGAGCTGGTCGACGACCCGGTTTGTG GAAACATGAACAACAACAAGGATGATGATCATGAGCCACATCTTCCCCTAATGGACGAGGGGAGACAGCCGTTGTCACGAAAAGTAGCGATTCCTTCGAG CCAAATCAATCCATACAGATTGATCATATTGATTCGACTAGTGGTTCTTGGTTTCTTCTTTCACTATAGAGTCTCACATCCTGTGACAAATGCTTATGGA CTATGGCTTGTCTCTGTGATATGTGAGATTTGGTTTGGACTTTCCTGGGTTCTTGATCAGTTTCCAAAGTGGTTTCCCATTGAGAGGGAAACTTATCTCG ATAGATTATCCATAAGGTATGACAAGGATGATGGTCAACCATCGCAACTTTCATCGATCGATATATTTGTAAGCACAGTTGATCCACTGAAAGAGCCGCC ATTAGTCACTGCCAACACTGTTTTATCCATTTTAGCAGTGGATTACCCAGTTCATAAAGTGTCGTGTTACGTTTCTGATGATGGTGCCGCTATGTTGACA TTCGAGGCACTGACTGAAACATCTGAATTTGCGAAAAAGTGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCCAGGGCACCTGAGTGGTACTTTGCTC AGAAGATAGATTACCTCAAAGACAAGGTTTTCCTTGGCCAAAGTGGAGGAGATGATGACGATGGAAACAAGTTGCCAAAGCTAGTTTATGTTTCAAGAGA GAAGAGGCCTGGGTTTAATCACCACAAGAAGGCTGGAGCTATGAATGCTTTGGTTAGAGTTTCTGCTGTAATGTCGAATGCACCTTTTGTACTAAACTTG GATTGTGATCACTACTTCAACAATAGCAAGGCTCTAAGGGAAGCAATGTGCTTCCTCATGGATCCATTATTGGGGAAGAGAGTATGTTTCGTACAATTCC CTCAGAGGTTTGATGGCATTGATAGAAATGATAGGTATGCTAACCGAAATACCGTATTTTTCGATATAAACATGAAAGGTTTGGACGGAATTCAAGGACC TATATATGTCGGAACAGGGTGTGTGTTCAAAAGGAAAGCGCTTTATGGATACGACGCTCCGGCAAGGGAGAGACAAGGGGGGAAGACTTGCAATTGTATG TTCAGCAAATGGGATTGTGGGTGTTGTTTTGGGACTGCGAGAAAGAAGAAGAAGAAGAAGAAGAAGAATAAATGTGGTAGGAAAACACCAAAGTTGGAGA TGATTTTCCAGAGGGATTCTAATTCTGGAGATTTGGAGGGTTCTCAAGACGTGCCTATTAGCGAAGGTGTGGAGAAGGAAAACATGATAGTTGGGAAATC CCAACTGAAGCTGCAGAAAAGGTTTGGACAATCTCCAGTATTTATAGCGGCAAGCCTTTTAGAGGACGGTGGAACAGTTGAAACCAGCGACATGGGAACT CTTCTTCAGGAAGCCATTCATGTGATTAGTTGCGGGTACGAGGAGAAAACAGAATGGGGAAAAGAGGTTGGATGGATATATGGATCAATTACAGAAGACA TACTAACAGGATTCAAGATGCATTGTCATGGATGGAGATCAATCTATTGCATCCCGGAGAGGCCGGCTTTCAAAGGGTCAGCTCCAATAAACCTTTCAGA CCGTCTTCATCAAGTGCTGCGATGGGCGTTAGGCTCCATGGAGATATTCCTCAGTAGGCATTGTCCTCTTTGGTATGGCTATGGAGGGCGTTTGAAATTG CTGGAGCGTTTGTCCTACATCAATGCAACCATTTATCCACTAACCTCTATTCCCTTACTCATCTACTGCACCCTCCCGGCTGTCTGCTTCCTCACTGGGA AATTCATCATCCCGGAGCTAAACAATGCAGCCAACTTGTGGTTTTTATCGCTCTTCATCTGCATCTTTGCGACCAGCCTCCTGGAGATGCGATGGAGTGG GGTTGGGATCGATGAGTGGTGGAGGAACGAGCAATTTTGGGTGATTGGTGGGGTCTCAGCTCATCTCTTTGCTGTATTCCAAGGACTGTTGAAAGTAATT GGAGGGGTAGACACTAATTTCACTGTTACAGCCAAGACAGTTGGTGGGGAACAAATTTCATCGGAGCTTCACGCTTTCAAATGGACTACACTCCTCATTC CACCGACTACCCTATTGATTCTAAACTTGTTTGGGGTGGTTGCAGGGATAGCTAGCTTCTTGAACAATACTGGGAATCAGTCCTGGGGTATCCTCTGCGG GAAGCTCTTCTTTGCGTTCTGGGTTATGGTTCATCTTTACCCTTTTCTCAAAGGCTTACTGGGTAGGAGTAATCGTACCCCGACTATTATCATCATCTGG TCTATTTTTCTTGCGTCCGTCTTCTCTATTTTGTGGGTTAGGATTGACCCCTTCATGCCCAAGCAAAACACTCTGGTTCTTGAAGATTGTGGATTAGATT GTCCGTAA
AA sequence Show only first row Show all	>Lus10022449 pacid=23171687 polypeptide=Lus10022449 locus=Lus10022449.g ID=Lus10022449.BGIv1.0 annot-version=v1.0 MEATGGNLVAGSHQRNELTVIRSELPSRIGDDEDELEDEYLSGQRCRICGDEIGVNGDGEVFLGCNECAFPICRACYDYERREGGQVCPRCKTRFKRLKG CPRVHGDEEEEDVDDLENEFNFDHRHFGSLVDNYNMPFFPSQFPLLTDVPMEDTCNAYQHALVPSFVNASVIGSSLPSSPIPGSVQVRPMDPSKDLAVYG YGSIAWKERMEAFRQEKLQVIKNEDELVDDPVCGNMNNNKDDDHEPHLPLMDEGRQPLSRKVAIPSSQINPYRLIILIRLVVLGFFFHYRVSHPVTNAYG LWLVSVICEIWFGLSWVLDQFPKWFPIERETYLDRLSIRYDKDDGQPSQLSSIDIFVSTVDPLKEPPLVTANTVLSILAVDYPVHKVSCYVSDDGAAMLT FEALTETSEFAKKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVFLGQSGGDDDDGNKLPKLVYVSREKRPGFNHHKKAGAMNALVRVSAVMSNAPFVLNL DCDHYFNNSKALREAMCFLMDPLLGKRVCFVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPIYVGTGCVFKRKALYGYDAPARERQGGKTCNCM FSKWDCGCCFGTARKKKKKKKKNKCGRKTPKLEMIFQRDSNSGDLEGSQDVPISEGVEKENMIVGKSQLKLQKRFGQSPVFIAASLLEDGGTVETSDMGT LLQEAIHVISCGYEEKTEWGKEVGWIYGSITEDILTGFKMHCHGWRSIYCIPERPAFKGSAPINLSDRLHQVLRWALGSMEIFLSRHCPLWYGYGGRLKL LERLSYINATIYPLTSIPLLIYCTLPAVCFLTGKFIIPELNNAANLWFLSLFICIFATSLLEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVI GGVDTNFTVTAKTVGGEQISSELHAFKWTTLLIPPTTLLILNLFGVVAGIASFLNNTGNQSWGILCGKLFFAFWVMVHLYPFLKGLLGRSNRTPTIIIIW SIFLASVFSILWVRIDPFMPKQNTLVLEDCGLDCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10022449 [exp]	0	1
AT2G01870			unknown protein		Lus10009946 [exp]	1.0	0.9452
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	5.5	0.9122
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	5.5	0.8908
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	6.3	0.9174
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	7.7	0.8994
					Lus10029656 [exp]	11.3	0.8811
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	12.0	0.9058
AT5G15802			unknown protein		Lus10022232 [exp]	12.4	0.8977
AT5G27290			unknown protein		Lus10018966 [exp]	13.0	0.9019
AT2G40435			unknown protein		Lus10029251 [exp]	13.1	0.8708

Compare expression of checked genes

Lus10022449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.