Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 440 / 4e-152 DHHC-type zinc finger family protein (.1) AT3G48760 436 / 5e-150 DHHC-type zinc finger family protein (.1) AT5G41060 417 / 2e-143 DHHC-type zinc finger family protein (.1.2) AT4G24630 367 / 9e-124 DHHC-type zinc finger family protein (.1) AT5G50020 345 / 7e-115 DHHC-type zinc finger family protein (.1.2) AT3G56930 330 / 3e-108 DHHC-type zinc finger family protein (.1.2) AT5G05070 316 / 9e-104 DHHC-type zinc finger family protein (.1) AT2G40990 299 / 3e-97 DHHC-type zinc finger family protein (.1) AT3G56920 288 / 7e-94 DHHC-type zinc finger family protein (.1) AT3G04970 87 / 2e-18 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016754 [exp] 799 / 0 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 444 / 1e-153 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 441 / 2e-152 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 355 / 2e-118 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 340 / 4e-112 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 326 / 3e-107 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 318 / 7e-105 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 317 / 3e-104 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10035395 [exp] 320 / 3e-102 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101900 [exp] 493 / 2e-172 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 486 / 6e-170 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 437 / 1e-150 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 432 / 7e-149 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 374 / 2e-126 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 370 / 8e-125 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 368 / 5e-124 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 354 / 1e-118 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 342 / 1e-112 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 335 / 4e-110 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10022451 pacid=23171752 polypeptide=Lus10022451 locus=Lus10022451.g ID=Lus10022451.BGIv1.0 annot-version=v1.0 ATGATGAGAGAGAGGGAGATGTATCCGGCTCCAATGCTTTCAAACGATCCTGCTGCTGCTGCTGCTGCTGCCAATTCCCTTGTTGATGATGATGATGATC ATCATCATGACAAGAATCGGCCTAGAGTTTATCAGGCTTGGAAAGGGAGTAATATATTTGTTTTTGGCGGTAGGCTTATATTCGGGCCAGATGCAAGATC ACTAACGCTAACTATGTTGCTGATTGGTGCACCTGCTGTTGTTTTTTGCGTCTTCGTGGGACGCAAGTTGATGGATGACTTCCCTCATCACTCTGGAATA TCAATACTTGTCATCATTTCTGTATTGACTGCTCTGGACTTGCTGTTTCTGCTATTAACAGCAGGGAGAGATCCTGGTATAATACCTAGGAACTCTCGGC CACCAGAGCCGGAAAGTAATCAAGGGGTTGAAACAGAAAGCACCCCACCTTTCCGTTTACCTCGAACTAAAGATGTTGTTGTGAATGGAATAGTTGTGAA AACCAAGTACTGTGATACCTGCATGCTATATAGACCACCACGCTGTTCTCACTGCTCAATTTGCAACAACTGTGTTCAAAGATTCGACCATCACTGCCCT TGGGTTGGTCAGTGCATCGGATTGCGAAATTATCGCTTCTTCTACATGTTTGTGTTCACCACCACGCTTCTCTGTTTGTACGTACATGGGTTCAGTTGGG TGTACATCAGGAGGATAGCAGACAGTGAACACATAACAATATGGAGAGCCATGACTAAAACCCCTGCCTCCATTGCCCTACTAGTTTACACCTTTGTTTC TGTTTGGTTCGTTGGTGGACTCACCGTCTTCCATACCTATCTTATCAGTAGAAACCAGTCTACGTATGAGAATTTCAGATACCGGTATGATGGTCTGCCA AACCCATTTGATCGAGGGTTTGCCAACAACTTCAAGGAGGTATTCTTCTCAACAATTCCCCCATCGAAGAACAACTTCAGGGAAAGAGTTCCAAAGGCTG TACCACTACCCCCTAGACTTATCAGTATGGGCCGTGCTACTACTTATGCCAATATGGATATGGACAAGTCATCCGGAGACCTGGAGCTCGGAATGAAGCC AGGATGGGACGTATCTGACAGAAGAGATGATTACCAGGGACATGGGAGAGGTGATCAAAGTCTTGTTTACAGCGAGAACGAGAATGGTGACGAATCATCG AATGGTGACGTTTCATCTCCAGAACATAGACAAGGTATGGATGTGCATAACCCATTGTCGTATTCTAGGAGGTCTAGTTTGGGAAGAACAAGTGGGAGAT TAGACTTATCATCCCCAGATGGAGCTCGAGTTGGGGAACCACAGAAGCAAGTCGCTGATGAGAGTGACAATGATGATAAGTTAACACAGGAGACTGAACA TCCTCAGACCAAGGACGAAGAAAGGAAAAGATAG
AA sequence Show only first row Show all	>Lus10022451 pacid=23171752 polypeptide=Lus10022451 locus=Lus10022451.g ID=Lus10022451.BGIv1.0 annot-version=v1.0 MMREREMYPAPMLSNDPAAAAAAANSLVDDDDDHHHDKNRPRVYQAWKGSNIFVFGGRLIFGPDARSLTLTMLLIGAPAVVFCVFVGRKLMDDFPHHSGI SILVIISVLTALDLLFLLLTAGRDPGIIPRNSRPPEPESNQGVETESTPPFRLPRTKDVVVNGIVVKTKYCDTCMLYRPPRCSHCSICNNCVQRFDHHCP WVGQCIGLRNYRFFYMFVFTTTLLCLYVHGFSWVYIRRIADSEHITIWRAMTKTPASIALLVYTFVSVWFVGGLTVFHTYLISRNQSTYENFRYRYDGLP NPFDRGFANNFKEVFFSTIPPSKNNFRERVPKAVPLPPRLISMGRATTYANMDMDKSSGDLELGMKPGWDVSDRRDDYQGHGRGDQSLVYSENENGDESS NGDVSSPEHRQGMDVHNPLSYSRRSSLGRTSGRLDLSSPDGARVGEPQKQVADESDNDDKLTQETEHPQTKDEERKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	1.4	0.9647
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	2.0	0.9595
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	2.4	0.9561
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	3.2	0.9364
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10023358 [exp]	4.2	0.9379
AT5G11680			unknown protein		Lus10020200 [exp]	4.5	0.9491
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	5.3	0.9410
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	6.0	0.9527
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	6.2	0.9148
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	8.4	0.9323

Compare expression of checked genes

Lus10022451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.