Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48540 312 / 2e-107 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016755 [exp] 331 / 5e-115 AT3G48540 259 / 3e-88 Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096400 [exp] 337 / 2e-117 AT3G48540 365 / 7e-130 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.012G097800 [exp] 275 / 2e-93 AT3G48540 306 / 1e-106 Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10022452 pacid=23171678 polypeptide=Lus10022452 locus=Lus10022452.g ID=Lus10022452.BGIv1.0 annot-version=v1.0 ATGAACCCTCGCGAGGTCGTTCTCGTCTCAACGGCCTCTGTGCTCGGTGCTCTAGCGTCTACCGTAGTATTTCACTTCTTCTCCAGCTTCAAGCCGAAAC TTTCCGCGCCCCAATCATCTTCCGATGGAGAAGCTGCAGAGAAATGTCTATCTCAGTGTCCCTTCGATCCTTCCAAGCGAAAGCGGTATCTTTCGTGGGA TGATTATTTCATGGCAATCGCTTTTCTGTCAGCTGAACGCTCCAAAGATCCAAACAGGCAGGTTGGAGCGTGTTTGGTTAGTGAGAATGGCATAATTCTA GGCATCGGTTACAATGGATTTCCCAGAGGCTGTTCAGATGACAAGCTCCCATGGGCAAAGAAATCCAAGAATGGCGACCCTTTGGAGACAAAGTACCCCT ATGTTTGTCATGCGGAAGTCAATGCTGTCCTGAACACAAATCATGCTTCTGCAGCAGGACAACGCCTTTATGTGACTATGTATCCATGCAATGAATGTGC CAAGATAATTATCCAGTCGGGTGTTTCTGAGGTGATATATTCCCTAGAGAAGAACATGAGCAGTTCAGATGTTGCATACGTTGCCTCCCGTAAACTATTG TTACTGGCTGGTGTTAAAATATTGCGCAATGAGATGAGATTGTTGGCAGACAAATCTCAGCTGTGTATTGAGTTGTCTAATAAGCTATGCAACCCAGATC GCATTGGCAGACAAATCTCAGCTGTGTATTGGGTTGGTCGCGGAGAATTTGCTGCCAATAGAAGACAGAAATGTGTATCCGGCAGTTGGGACCATGAATG GGGCAAAAGAACAACAGGTTTCAGGGATTCCAAGGGTCCTGGGCAGATGTGCAATGGGGGGAACATCCATATCTTTCTTGTGGAGGGCCTCCCTAATGGG GAGGATGCGGTGGAGGATTTTCCATAG
AA sequence Show only first row Show all	>Lus10022452 pacid=23171678 polypeptide=Lus10022452 locus=Lus10022452.g ID=Lus10022452.BGIv1.0 annot-version=v1.0 MNPREVVLVSTASVLGALASTVVFHFFSSFKPKLSAPQSSSDGEAAEKCLSQCPFDPSKRKRYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSENGIIL GIGYNGFPRGCSDDKLPWAKKSKNGDPLETKYPYVCHAEVNAVLNTNHASAAGQRLYVTMYPCNECAKIIIQSGVSEVIYSLEKNMSSSDVAYVASRKLL LLAGVKILRNEMRLLADKSQLCIELSNKLCNPDRIGRQISAVYWVGRGEFAANRRQKCVSGSWDHEWGKRTTGFRDSKGPGQMCNGGNIHIFLVEGLPNG EDAVEDFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10022452 [exp]	0	1
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	3.9	0.8768
AT4G39380			unknown protein		Lus10033530 [exp]	4.0	0.8749
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	5.3	0.8817
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	6.9	0.8824
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	10.2	0.8723
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	15.3	0.8607
AT1G61000			unknown protein		Lus10012690 [exp]	17.4	0.8400
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	20.8	0.8248
AT5G65120			unknown protein		Lus10016802 [exp]	21.4	0.8650
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	21.6	0.8101

Compare expression of checked genes

Lus10022452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.