Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63400 411 / 2e-147 ADK1 adenylate kinase 1 (.1.2) AT5G50370 397 / 1e-141 Adenylate kinase family protein (.1) AT5G47840 132 / 3e-37 AMK2 adenosine monophosphate kinase (.1) AT5G35170 137 / 5e-37 adenylate kinase family protein (.1.2) AT2G37250 104 / 1e-26 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 99 / 1e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26667 88 / 5e-21 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G60180 85 / 8e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G25280 81 / 4e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 49 / 1e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016757 [exp] 486 / 5e-177 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10037995 [exp] 120 / 1e-33 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10009478 [exp] 118 / 5e-33 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 120 / 2e-31 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10009228 [exp] 108 / 3e-28 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10001984 [exp] 108 / 4e-28 AT2G37250 391 / 4e-138 adenosine kinase (.1) Lus10030296 [exp] 106 / 4e-27 AT2G37250 395 / 1e-139 adenosine kinase (.1) Lus10040358 [exp] 105 / 6e-27 AT2G37250 405 / 1e-143 adenosine kinase (.1) Lus10023476 [exp] 104 / 2e-26 AT2G37250 407 / 2e-144 adenosine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095300 [exp] 455 / 7e-165 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 441 / 3e-159 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.013G103400 [exp] 144 / 2e-41 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.019G078200 [exp] 140 / 3e-40 AT5G47840 332 / 8e-115 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 132 / 2e-35 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.008G046100 [exp] 117 / 2e-31 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.010G215300 [exp] 101 / 2e-25 AT2G37250 382 / 2e-134 adenosine kinase (.1) Potri.014G104700 [exp] 90 / 1e-21 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 80 / 3e-18 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G043300 [exp] 79 / 1e-17 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00406 [flax] [poplar] ADK Adenylate kinase CL0023 [flax] [poplar] PF05191 [flax] [poplar] ADK_lid Adenylate kinase, active site lid
Representative CDS sequence Show only first row Show all	>Lus10022453 pacid=23171738 polypeptide=Lus10022453 locus=Lus10022453.g ID=Lus10022453.BGIv1.0 annot-version=v1.0 ATGGCGAGCCCTTCGGCGGCGACTTTGGAAGATGTTCCCATCGTTGATCTCATGACCGAGCTCCTCCGCCGCATGAAGTGTGCCACCAAACCTGACAAGC GCCTCATTCTTATCGGTCCTCCTGGATCAGGAAAAGGTACTCAATCACCGATCATTAAGGATGAGTTCTGCTTGTGTCACTTGGCTACAGGGGATATGTT GAGAGCTGCTGTTGCAGGCAAAACTCCTCTTGGAATCAAGGCTAAGGAGGCAATGGAAAAGGGACAACTTGTTTCTGATGATTTGGTAGTTGGAATTATT GATGAAGCAATCAAGAAGCCCTCTTGTCAAAAAGGCTTCATTCTTGATGGGTTTCCACGGACTGTGGTCCAGGCGCAGAAGCTTGATGAGATGCTTGAGA AGCAAGGAGTCAAAGTTGATAAGGTGCTGAATTTTGCCATTGATGATTCTATTTTGGAAGAGAGAATTACTGGTCGCTGGATCCACCCTTCAAGTGGTAG AACCTATCACACCAAATTTGGACCTCCCAAGAACCCTGGTGTTGATGATGTAACTGGAGAACCGTTGATCCAGCGGAAGGATGACACAGCTGCAGTCCTA AAGATTAGGCTGGAGGCATTCCATAAGCAGACTGAACCCGTGATTAACTATTACAAGCAAAAGGGTGCTGTTGCGGATCTCCACGCAGAGAAAGCTCCCA AAGAGGTCACAGCTGAGGTTGAGAAAGCGCTTTCCTCCTGA
AA sequence Show only first row Show all	>Lus10022453 pacid=23171738 polypeptide=Lus10022453 locus=Lus10022453.g ID=Lus10022453.BGIv1.0 annot-version=v1.0 MASPSAATLEDVPIVDLMTELLRRMKCATKPDKRLILIGPPGSGKGTQSPIIKDEFCLCHLATGDMLRAAVAGKTPLGIKAKEAMEKGQLVSDDLVVGII DEAIKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQGVKVDKVLNFAIDDSILEERITGRWIHPSSGRTYHTKFGPPKNPGVDDVTGEPLIQRKDDTAAVL KIRLEAFHKQTEPVINYYKQKGAVADLHAEKAPKEVTAEVEKALSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10022453 [exp]	0	1
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10037189 [exp]	3.5	0.9656
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	4.6	0.9488
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	9.2	0.9378
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	9.2	0.9443
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10000788 [exp]	10.2	0.9542
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10043157 [exp]	10.8	0.9400
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	12.4	0.9323
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10040521 [exp]	14.3	0.9264
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	14.3	0.9412
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005504 [exp]	15.1	0.9240

Compare expression of checked genes

Lus10022453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.