Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63420 1195 / 0 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT3G49180 202 / 3e-56 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 74 / 4e-13 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 74 / 5e-13 MAC3A MOS4-associated complex 3A (.1.2) AT1G11160 63 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 62 / 4e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G79990 58 / 4e-08 structural molecules (.1.2.3.4.5) AT1G18080 57 / 4e-08 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 57 / 9e-08 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT3G15980 57 / 1e-07 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016758 [exp] 1664 / 0 AT5G63420 1222 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10016759 [exp] 840 / 0 AT3G49180 209 / 2e-62 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013988 [exp] 206 / 6e-55 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10015407 [exp] 108 / 3e-25 AT3G49180 169 / 3e-49 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10034114 [exp] 66 / 2e-10 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10011224 [exp] 65 / 6e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 64 / 1e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043473 [exp] 63 / 1e-09 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10039636 [exp] 59 / 8e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095800 [exp] 1260 / 0 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.015G093600 [exp] 1229 / 0 AT5G63420 1230 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.015G093300 [exp] 493 / 6e-161 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G027200 [exp] 205 / 3e-57 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G384200 [exp] 127 / 7e-31 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 69 / 2e-11 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.001G173500 [exp] 69 / 3e-11 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.010G066000 [exp] 67 / 7e-11 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.011G045500 [exp] 66 / 3e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.013G079600 [exp] 64 / 5e-10 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily CL0398 [flax] [poplar] RMMBL_DRMBL PF07521 [flax] [poplar] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain
Representative CDS sequence Show only first row Show all	>Lus10022454 pacid=23171633 polypeptide=Lus10022454 locus=Lus10022454.g ID=Lus10022454.BGIv1.0 annot-version=v1.0 ATGGATCCGAAAGGATTCAATTCGAAGGAAGGCGAGGCCTTGGTATTGTGCGGAGACAGGAATATGGGAACCGGAATCGAGTTGTGGGATTTAGAGTCAG GAGATCGTATTCTTCACATCCCAACTTGCGCCTCTCCTCCTCACGGACTATCCTGCTTGAGATCCCAGGTTCTCTTCGCTTCTCAGGCCAATAAGCATGG CTCTGTTGGCGGTGGAGCCATTTTCTCTTGGCATTTAAACAAGCCTCACTCACCGATAAGGAGCTACCAGATTGAAGCCATTGGGCCACTTGCTGCCACC TACAACGGGATGTATCTGGTAGCTGGTGCTCTTTCAGGAAATGCTTATATATGGGAGGTGACTAGTGGGAGATTGCTCAAAACTTGGAGAGCCCATCATA GATCTTTCAAGTGCATTGCTTTCTCTAATAATGATTCCCTTGTTATTGTTGGATCCGATGATGGGACTATTCTTGCGTGGCCATTAATTAGTTTGCTGGT CGTTGAAGATGGTGGAAGCTCGTCGTCATTGTTACACTATTCGATGGAGCATAAGTCCTCTATAACATCACTATTAATGCCGCCTGGCAGTACAAACTCC TTGTTTATATCTACTTCTCTTGATGCCACTTCCAAGGTGTGGGAGCTCGTCTCTGGTAGGTTGATGCAAACACTCGAGTATGCGACGGGAATAGCTGCAG CTACCCTGCATCCAGATGAGCCACTTCTGTTCACTGGTAGCAGTATAGATGGAAGAATATTTGTTAATGTTGTTGATCTTGGACTGATACATGATCATGA ATCTATTACTGGGGTACAAGGACAGATGGGTGTGCTAAAAGGACACAATGGGTCAATAACAGCATTAACGTTTAGCAGATCTGGCCTCATATCTGCATCT GAAGATTGCACTGTCTGCCTTTGGGATGTAGGTTCTCAGCAGATTGTATGGAGAATCAACCATAAAAAAGGACCTGTTACGAATCTCGTACTAGTTCCAC ATTCTTCAATGCTTTCCACTCCAAATCATCACCAAAGAGTTTCTAGTCGGTTTTGCATTTCTTTGCTCGACAAGTGCCATCGGCAGGCCGATCCATCTAA AGGAGTGATTGCTTTTCTCCCATCATATTCTTTACCTATTGATGGCGGACAAAGTAGTACTTCATTAGAGTTACAGATAAACAATTCAGTGGATCGTCAA ATATTGGAGATAGAGATGAGCATAGGGAAGCAGATGTGGGCTTTGCAAATGACGAAGCACGTTATGAAAATGAACAAGCATTTGCAGAGTCGACTGCTAG ACCTGATGCAGAGCAGATTACTGCTGGCTTGCCACAACACAGATGTCCCTAGGATAAATAATAAGAAGAAGAAGACGACGAATAAAACACAGCTGAAGAC TCAAAGTAGATGTTCATCTGAAGAGGAGCTGTCCTTCCAACCGGGGAACGCTTCCTTGTACGTTTTTCTAACAAGTTCCCGCTCCAAGCTGCAGCTCAGT ACTTTTCTAAAACCCTGCTGCCGCTCTCTACTCCCCTATCTGGATTTTTTCTTGTTAGGATTATCGGCAAGGCCCTATCTGGGTCCGTCGGCACAAATGC GTTTGGAGCTTTTAGGGATTTCTTCTCCCTCACCTTCCTTCAACTCACTCTCCTCTCTCAACCCAAACATGTCCACTTTCAGTCTCACTGCTCCCTCGCT CTGCCCTTATTACCGCCCTGGTCTTGCCAAGTTCTCTGTTTCTTGCGGCACTGGTTCCCCGACCAAGATAGGAAGCAGCCGGGTATCCAAAGCAACACCA CGTAAAAGACCAAGTAGAAGAATGGAAGGGGTAGGGAAAAGTATGGAGGATTCTGTTAAACGCAAAATGGAACAGTTCTATGAAGGAGCTGATGGCCCAC CGCTACGTATTGTTCCAATTGGTGGACTTGGCGAGATTGGAATGAATTGCATGCTGGTCGGGAATTACGATCGCTATATTCTAATTGACGCTGGTGTTAT GTTTCCTGACGATGAAGATCTCGGCGTTCAAAAGATTTTGCCAGACACCACGTTTATCAAAAGATGGAGTCACAAAAGTATCCACAAAGTTGGGGCGGTT GTTATAACTCATGGCCATGAAGATCACATCGGTGCGTTGCCATGGGTGATTCCGGCTTTGGATGCAAATACCCCGATATTCGCTTCATCTTTTACAATGG AGCTGATCAAAAAACGTCTGAAGGAGCATGGTTTCTTTCTTCCTTCCAGACTAAAAGTTTTCAGAACAAGGAAGAGATTCACTGCTGGGCCTTTTGAAAT AGAGCCAATCACAGTGACCCACTCAATTCCTGATTGTAGTGGTCTCATTCTTCGTTGTTCTGATGGTATAATCCTTCATACTGGTGATTGGAAGATAGAT GAATCACCATTGGATGGCAAACCATTTGATCGTGAAGCTCTAGAAGAACTCTCAAAGGAAGGAGTGACATTGATGATGAGCGATTCAACAAATGTGTTAT CGCCAGGAAGGACAACTAGTGAAACTGTTGTAGCGGATTCACTGTTGAGACATATTTCTGCTGCTAAAGGAAGGGTTATTACTACTCAATTTGCGTCAAA TATATGGCGGCTAGGAAGTGTGAAAGCTGCTGCTGATTTGACAGGAAGAAAGCTTGTTTTTGTTGGCATGTCCTTAAGGACATACTTGGATGCTGCTTGG AAGGATGGAAAAGCACCTATTGACCCTGCCACTCTGGTGAAAGCAGAAGATATTGATCAATACGCACCTAAAGATTTATTGATTGTAACAACTGGGTCAC AAGCAGAACCTCGAGCCGCACTAAATCTTGCATCGTATGGAACTAGCTATGCTTTCAAACTGAAAAAGGAAGATATAATTCTTTATTCAGCTAAGGTTAT CCCTGGTAATGAATCAAGAGTAATGAAAATGATGAATCGCATAACAGAAATTGGGTCAACCATAGTAATGGGTAGAAACGAGCAACTGCACACTTCTGGT CATGGGTATCGTGGAGAGCTGGAGGAGGTACTTAAAATCGTGAAACCGCAGCACTTTCTCCCTATACATGGAGAACTCTTGTTCTTGAAAGAACATGAAT TGCTTGGAAAGTCAACTGGAGTGCATCATACTACTGTCATTAAGAACGGGGAGATGCTCGGGGTATCACATTTAAGGAATAGAAGAGTGTTATCTAATGG TTTCATTTCTCTCGGAAAGGAGAATTTACAGCTAATGTATAGTGATGGTGATAAAGCATTTGGCACAGCAACTGAGCTTTGCATCGAGGAGAGGCTAAGA ATTGCAACCGATGGAATCATAGTGGTCAGCATGGAAATCTTGCGACCTCAGGGCGTAGATAGTGTGAGCGAAAATAACATAAAAGGCAGAATAAGAATCA CAACACGGTGCTTGTGGTTGGACAAGGGGAAGCTTTTAGATGCACTCCACAAAGCTGCCCACGCCGCCCTTTCAAGTTGCCCTTTAAACTGTCCTTTAGC GCACATGGAAAGAACAGTAGCCGAGGTATTAAGGAAGATGGTGAGGAAGTATAGTGGCAAAAGGCCTGAGATGATTGTTATTGCCATGGAAAACCCAGCA GGGGTTCTTTCTGAAGAACTGTCTGCAAAGCTTGCTGGCAAATCAGAAATGGGGTTTGGGATATCAGCATTGAGAAAAGTAATCGACAAACATCCTGAAA GAAGAAACAACAAGTCACAAATTGACGAAAATGGATATGGTTACATTGAGGATGCACCACTAGAGGATTCTGAAGAAGAGGATGCAGTTGAGGAAGATAA CACTAATTCAAGTGAGAGGTTGGATGGAAGGACTGAGGAGGATGATAATTTTTGGCGTTCAATGATCTCATCACTGCCTGGTGACCCTTCAGAAGAAGAA GCTAATGTGAGAGGTGGTGGTAATGACAGTAGTGAAGATAATGACGCAGAGAAAACTAGGCAGAAATCTGGTAAGCGTAATAAGTGGAAACCGGAGGAGA TCAAGAAGCTAATTAAAATGAGAGGGATTTTCCATAGCAGGTTTATAAGTGTAAAGGGAGGAAGGATGGCCCTCTGGGAAGATATATCTAGTAGCTTGAT GGAAGAGGGGATCGAACGCACTCCAGGACAATGCAAATCGCTGTGGGCATCTCTGGTACAAAAATACGAGGAAAGCAAAAACGGGCCTGAGAGTGGAAAA GAATGGCAATATTTTGAACAAGTGAAGAGCATTCTATCTGATCACGAGCCTGAGCCAACAGCAGCGGCTAAATGA
AA sequence Show only first row Show all	>Lus10022454 pacid=23171633 polypeptide=Lus10022454 locus=Lus10022454.g ID=Lus10022454.BGIv1.0 annot-version=v1.0 MDPKGFNSKEGEALVLCGDRNMGTGIELWDLESGDRILHIPTCASPPHGLSCLRSQVLFASQANKHGSVGGGAIFSWHLNKPHSPIRSYQIEAIGPLAAT YNGMYLVAGALSGNAYIWEVTSGRLLKTWRAHHRSFKCIAFSNNDSLVIVGSDDGTILAWPLISLLVVEDGGSSSSLLHYSMEHKSSITSLLMPPGSTNS LFISTSLDATSKVWELVSGRLMQTLEYATGIAAATLHPDEPLLFTGSSIDGRIFVNVVDLGLIHDHESITGVQGQMGVLKGHNGSITALTFSRSGLISAS EDCTVCLWDVGSQQIVWRINHKKGPVTNLVLVPHSSMLSTPNHHQRVSSRFCISLLDKCHRQADPSKGVIAFLPSYSLPIDGGQSSTSLELQINNSVDRQ ILEIEMSIGKQMWALQMTKHVMKMNKHLQSRLLDLMQSRLLLACHNTDVPRINNKKKKTTNKTQLKTQSRCSSEEELSFQPGNASLYVFLTSSRSKLQLS TFLKPCCRSLLPYLDFFLLGLSARPYLGPSAQMRLELLGISSPSPSFNSLSSLNPNMSTFSLTAPSLCPYYRPGLAKFSVSCGTGSPTKIGSSRVSKATP RKRPSRRMEGVGKSMEDSVKRKMEQFYEGADGPPLRIVPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDDEDLGVQKILPDTTFIKRWSHKSIHKVGAV VITHGHEDHIGALPWVIPALDANTPIFASSFTMELIKKRLKEHGFFLPSRLKVFRTRKRFTAGPFEIEPITVTHSIPDCSGLILRCSDGIILHTGDWKID ESPLDGKPFDREALEELSKEGVTLMMSDSTNVLSPGRTTSETVVADSLLRHISAAKGRVITTQFASNIWRLGSVKAAADLTGRKLVFVGMSLRTYLDAAW KDGKAPIDPATLVKAEDIDQYAPKDLLIVTTGSQAEPRAALNLASYGTSYAFKLKKEDIILYSAKVIPGNESRVMKMMNRITEIGSTIVMGRNEQLHTSG HGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGVHHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGDKAFGTATELCIEERLR IATDGIIVVSMEILRPQGVDSVSENNIKGRIRITTRCLWLDKGKLLDALHKAAHAALSSCPLNCPLAHMERTVAEVLRKMVRKYSGKRPEMIVIAMENPA GVLSEELSAKLAGKSEMGFGISALRKVIDKHPERRNNKSQIDENGYGYIEDAPLEDSEEEDAVEEDNTNSSERLDGRTEEDDNFWRSMISSLPGDPSEEE ANVRGGGNDSSEDNDAEKTRQKSGKRNKWKPEEIKKLIKMRGIFHSRFISVKGGRMALWEDISSSLMEEGIERTPGQCKSLWASLVQKYEESKNGPESGK EWQYFEQVKSILSDHEPEPTAAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10022454 [exp]	0	1
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10016758 [exp]	1.0	0.9684
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	5.7	0.9368
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	8.5	0.8724
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	9.4	0.9103
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	10.5	0.9132
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	11.0	0.8937
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	12.0	0.8620
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	13.8	0.8977
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	14.0	0.9029
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	16.2	0.8962

Compare expression of checked genes

Lus10022454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.