Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63440 439 / 5e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) AT1G49170 69 / 1e-14 Protein of unknown function (DUF167) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016760 [exp] 478 / 4e-174 AT5G63440 439 / 8e-159 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Lus10033521 [exp] 47 / 1e-06 AT1G49170 151 / 3e-48 Protein of unknown function (DUF167) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096500 [exp] 443 / 1e-160 AT5G63440 442 / 5e-160 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Potri.015G094300 [exp] 433 / 1e-156 AT5G63440 429 / 5e-155 Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3) Potri.005G056500 [exp] 61 / 5e-12 AT1G49170 172 / 1e-56 Protein of unknown function (DUF167) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02594 [flax] [poplar] DUF167 Uncharacterised ACR, YggU family COG1872
Representative CDS sequence Show only first row Show all	>Lus10022455 pacid=23171702 polypeptide=Lus10022455 locus=Lus10022455.g ID=Lus10022455.BGIv1.0 annot-version=v1.0 ATGCCGAAACGAACAACCCACACTTACTCGAGCGAGGACGCAGTTCCCGACGGTCCTGATTCCGATCTCTTCGTCTATTATTGCAAACACTGCAGTTCCC ACGTCCTTATTACAGATACCCAGTTACAGAAAATGCCCAAAAGGAAGACTGACAAGTCCTATGTCTTGGAAAAGAAGAAGCATCTCGCCAGGCTCAACAT CAGTGATGCTGGAAAGGTTCTATTGAAAAGGGGCGAGGGGAAATTGGAGAAGCAATTTCGTATGAACTGTATTGGCTGTGGCCTGTTTGTCTGCTACCGT GCTGAAGAAGATGTAGAAAATGCATCCTTTATATATGTAGTTGATGGCGCTCTCAGCGCAGTTGCTGCAGAAACTAACCCTCAGGATGCTCCTGTGCCGC CCTGCATATCACAAGTGGAAAGAGGACTTGTCCAGGTGGCCATCGAGGTGGAGGACCGTGCACAGCGATCAGCAATAACAAGAGTTAATGCTGACGATGT ACGAGTATCAGTGGCAGCACCTGCAACCCGTGGAGAAGCTAACAATGAACTTCTAGAATTCATGGGCAAAGTCTTGGGTCTGAGACTAAGCCAGATGACT CTACAGAGAGGATGGAATAATAAATCCAAGCTCTTAGTTGTTGAGGATTTGTCAGCTAGACAGGTGTACGAGAAACTTTTGGAAGCAGTACAAACTTAA
AA sequence Show only first row Show all	>Lus10022455 pacid=23171702 polypeptide=Lus10022455 locus=Lus10022455.g ID=Lus10022455.BGIv1.0 annot-version=v1.0 MPKRTTHTYSSEDAVPDGPDSDLFVYYCKHCSSHVLITDTQLQKMPKRKTDKSYVLEKKKHLARLNISDAGKVLLKRGEGKLEKQFRMNCIGCGLFVCYR AEEDVENASFIYVVDGALSAVAAETNPQDAPVPPCISQVERGLVQVAIEVEDRAQRSAITRVNADDVRVSVAAPATRGEANNELLEFMGKVLGLRLSQMT LQRGWNNKSKLLVVEDLSARQVYEKLLEAVQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63440			Protein of unknown function (D...		Lus10022455 [exp]	0	1
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001413 [exp]	3.9	0.6591
AT4G40045			unknown protein		Lus10043427 [exp]	4.5	0.7075
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10037239 [exp]	5.3	0.7217
AT3G49645			unknown protein		Lus10027884 [exp]	6.7	0.6831
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	7.1	0.7170
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	16.1	0.6760
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	17.2	0.6685
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	21.3	0.6739
AT2G17240			unknown protein		Lus10043214 [exp]	22.8	0.6696
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	24.9	0.6160

Compare expression of checked genes

Lus10022455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.