Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14170 495 / 2e-171 CHC1 SWIB/MDM2 domain superfamily protein (.1) AT3G01890 430 / 4e-147 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 52 / 7e-08 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 52 / 8e-07 SWIB complex BAF60b domain-containing protein (.1) AT4G34290 47 / 3e-06 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 47 / 5e-06 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 44 / 2e-05 SWIB/MDM2 domain superfamily protein (.1) AT1G49520 47 / 3e-05 SWIB complex BAF60b domain-containing protein (.1) AT4G22360 42 / 0.0006 SWIB complex BAF60b domain-containing protein (.1) AT4G26810 40 / 0.0006 SWIB/MDM2 domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016761 [exp] 1013 / 0 AT5G14170 519 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10032049 [exp] 481 / 9e-166 AT5G14170 756 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10035214 [exp] 379 / 6e-129 AT5G14170 553 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 49 / 1e-06 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 44 / 1e-05 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 47 / 3e-05 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 46 / 6e-05 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10035215 [exp] 41 / 0.0007 AT5G14170 56 / 1e-14 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096700 [exp] 645 / 0 AT5G14170 564 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.015G094500 [exp] 635 / 0 AT5G14170 580 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.017G069300 [exp] 517 / 8e-180 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.001G331400 [exp] 494 / 7e-171 AT5G14170 752 / 0.0 SWIB/MDM2 domain superfamily protein (.1) Potri.001G297400 [exp] 47 / 2e-06 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 46 / 6e-06 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.005G134500 [exp] 48 / 1e-05 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.013G070600 [exp] 44 / 3e-05 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.004G145200 [exp] 44 / 0.0001 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.006G010700 [exp] 44 / 0.0002 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10022456 pacid=23171771 polypeptide=Lus10022456 locus=Lus10022456.g ID=Lus10022456.BGIv1.0 annot-version=v1.0 ATGAATAACAATACTCCGACGAGGAGTGTAGGAGCACCACCGATTTCGTTTGCCAATCCTGGGGCTGGAGTGCAATCTGTTCCCTTGAGTCACAATGCTC CCCACCTTTTCTCCCAGTCTAAACCTCAAACGCAAGCAGGACCGTTTCCTGGACACTTTCACCTCTCGGAGCCACAATCTCAGGTGTTAAGCCATTCCCA ACAGATGCATCCTCCACATGTTCGTTTCCAGACTCAGCTTCAATCAACCAACCATCCTACTTCTCAGCTGCAAAATCCAGTTCCTGGTAATGCTCCAGCT ACTGCAGGTACCAAACGAGCTAGTCACAAACCCCCTTCTAAGGCAGTTGGAGGTTCGGGTAATGCCAACTTGTCTTCACCTTTCAGGACAATGGAGTTAG CCCCTGCCCCAGATAGGAAGAGGCCGAAGCTTTCTGATAAGCAGATACCTGAAAAAGTTGCAGCCAAATTTCCGGAGTCTGCACTTTATGCTAAGTTGCT TGAATATGAGGCTAGAGTGGATAATGTTGTCACACTGAAGAGGATTGATTTCCAAGAGGCCCTTAAAAACCCTCCTCGAATAAGGAAAACACTTCGTTTG TATGTTTTCAACACTTTTGACAATCAAGGACTAGCCTCTGCTGATAAGCCAGCTGCAGAACTTCCTTGGTGGTCTTTGAAGATTGTTGGAAGAATCTTGG AAGAAGGGAAAGATCCCGTGCTACAAGGACTGGAGCAGAAATCCTACCCAAAATTCTCGTCTTACTTCAAGAAAATCACCATAATCGTAGACCAAGGTGT CTACCCTGAGAAACAAGTAGTTGTGTGGGATAGTAGTCGATCTACGGAACTTCATGATGGCTTCGAGGTGAAAAGAAAAGGTGACAAGGAATTCACCGCT GTAATCAGATTAGAAATGAATCACACACCGGATAAATTCAAGATTGCGCCTGCTCTATCTGAAATTCTTGGCCTAGAGGTAGAGACGCGTCCAAGAATTT TGATGGCAATTTGGCATTACGTGAAGTCGAATAAGCTGCAAAACCCAAATGATACAGCTTCATTCATTTGTGATTCACCATTGAAAAGATTATTTGGGGA AGAAAAGATGAAGTTTTCAATGGTAGCACAGAAGATTAACCAGTACTTAACAATTCCACCTCCTATTCATTTGGAACATACGATCAATCTACCAGGGAAT TCTCCGGGAGGAACTTCTTGTTATGACATTGATGTTGATGTTCCCTTTCCGGTACGAAATGAAATTTCTACCTTCTTGGAGAATACAGCAAGGCAGAAAG AAATCGATGCTTATGACAAAATAATATGCGATTCAATAAAGAAGATCCATGAGCATTCCCGAAGGCGTGCTTTCTTTCTTGGATTCAGTCACTCTCCGGC TGAGTTTATCAGCACTTTAATTGCTTCTCAGAGCAAAGATCTAAGGTTTGTAGCTGGAGATATCAACTCAAACTCAGAAGAAGAGGGCCATAAGGAGTTC TATAATCAGCCATGGGTAGAAGATGCTGTTCAACGTTACCTGAACCGCATAGCTGCAGGAGGCGATGCAACTGGAACCGGAAGGAGTTGA
AA sequence Show only first row Show all	>Lus10022456 pacid=23171771 polypeptide=Lus10022456 locus=Lus10022456.g ID=Lus10022456.BGIv1.0 annot-version=v1.0 MNNNTPTRSVGAPPISFANPGAGVQSVPLSHNAPHLFSQSKPQTQAGPFPGHFHLSEPQSQVLSHSQQMHPPHVRFQTQLQSTNHPTSQLQNPVPGNAPA TAGTKRASHKPPSKAVGGSGNANLSSPFRTMELAPAPDRKRPKLSDKQIPEKVAAKFPESALYAKLLEYEARVDNVVTLKRIDFQEALKNPPRIRKTLRL YVFNTFDNQGLASADKPAAELPWWSLKIVGRILEEGKDPVLQGLEQKSYPKFSSYFKKITIIVDQGVYPEKQVVVWDSSRSTELHDGFEVKRKGDKEFTA VIRLEMNHTPDKFKIAPALSEILGLEVETRPRILMAIWHYVKSNKLQNPNDTASFICDSPLKRLFGEEKMKFSMVAQKINQYLTIPPPIHLEHTINLPGN SPGGTSCYDIDVDVPFPVRNEISTFLENTARQKEIDAYDKIICDSIKKIHEHSRRRAFFLGFSHSPAEFISTLIASQSKDLRFVAGDINSNSEEEGHKEF YNQPWVEDAVQRYLNRIAAGGDATGTGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10022456 [exp]	0	1
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	5.2	0.9115
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	6.9	0.8889
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	9.2	0.8891
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	10.2	0.8870
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	12.2	0.9026
AT3G22520			unknown protein		Lus10041202 [exp]	13.4	0.8887
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	14.9	0.8742
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	15.9	0.8791
AT3G53440			Homeodomain-like superfamily p...		Lus10039632 [exp]	17.5	0.8799
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10042871 [exp]	17.8	0.8024

Compare expression of checked genes

Lus10022456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.