Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63460 169 / 1e-53 SAP domain-containing protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016762 [exp] 262 / 3e-90 AT5G63460 180 / 1e-58 SAP domain-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094600 [exp] 197 / 1e-64 AT5G63460 201 / 1e-66 SAP domain-containing protein (.1.2.3.4) Potri.012G096900 [exp] 176 / 3e-56 AT5G63460 186 / 4e-61 SAP domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10172 [flax] [poplar] DDA1 Det1 complexing ubiquitin ligase CL0306 [flax] [poplar] HeH PF02037 [flax] [poplar] SAP SAP domain
Representative CDS sequence Show only first row Show all	>Lus10022457 pacid=23171669 polypeptide=Lus10022457 locus=Lus10022457.g ID=Lus10022457.BGIv1.0 annot-version=v1.0 ATGGATCAGTCGTCTCCTCCTTCTCCAACTCCACATTCCCTTCCGCTTTCCAATTCGAATTCTGGTGCTTCCAAGTTCCTCTCCAACCTCCCCTCTCGCG GCTTATTGTCTTCCACTGTTCTCTCCTCCAACCCGGGTGGAATGCGAGTATATATCTGCGAACACGAAACACTACCTCCAGACGACCAGCTGATAAAGAC TAACCAGACAAACATATTAATTAGATCACTCCAGCTCAAGAAACACAAGGGTGAATCTGGTCCGAAAGACGCAAGTGGATCAAATGCAGCCGAGAGTTCT AAGAAGAGACCTTCAGAAAGGGCATTGGAGGGTAGAGGTTCAGCTAAGAGAAACAGTAGCCAGAATGGTCCACAACCTGCGGAAGGGTCTGGAAGCCGCA CGGCTGACAAGGAGTTGTACAGTTTGACTGTGGAGAAACTGCGTGCTCTTCTAAAGGAACGCGGCCTTTCACCAAAAGGGAAGAAGGTAATGATCTGGTC TAATCGTAATTGTTCTGTGGCCAATTTGATTTGGTGTCCGGTCATTCATAACTTGACTTGGTCTGCAGGAGGAACTGGTTGCGAGGCTAAGAAGTGCAAT TGGTTGACTTTGTTGCATGCTTGCTTGCTGTAA
AA sequence Show only first row Show all	>Lus10022457 pacid=23171669 polypeptide=Lus10022457 locus=Lus10022457.g ID=Lus10022457.BGIv1.0 annot-version=v1.0 MDQSSPPSPTPHSLPLSNSNSGASKFLSNLPSRGLLSSTVLSSNPGGMRVYICEHETLPPDDQLIKTNQTNILIRSLQLKKHKGESGPKDASGSNAAESS KKRPSERALEGRGSAKRNSSQNGPQPAEGSGSRTADKELYSLTVEKLRALLKERGLSPKGKKVMIWSNRNCSVANLIWCPVIHNLTWSAGGTGCEAKKCN WLTLLHACLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63460			SAP domain-containing protein ...		Lus10022457 [exp]	0	1
AT5G63460			SAP domain-containing protein ...		Lus10016762 [exp]	1.0	0.9176
					Lus10011136 [exp]	2.0	0.9096
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	7.5	0.9001
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	11.3	0.8993
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	13.0	0.8912
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	14.0	0.8627
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10027231 [exp]	15.3	0.8068
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	16.7	0.8684
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	23.3	0.8873
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	23.4	0.8832

Compare expression of checked genes

Lus10022457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.