Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48530 538 / 0 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G69800 258 / 1e-81 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT1G80090 45 / 5e-05 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016763 [exp] 820 / 0 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10013265 [exp] 222 / 1e-67 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10030788 [exp] 203 / 1e-60 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10026352 [exp] 94 / 1e-20 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10042308 [exp] 86 / 4e-18 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10029432 [exp] 46 / 3e-05 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10004227 [exp] 46 / 5e-05 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094700 [exp] 630 / 0 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.012G097000 [exp] 628 / 0 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.017G053600 [exp] 237 / 2e-73 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Potri.009G118700 [exp] 113 / 2e-27 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10022458 pacid=23171686 polypeptide=Lus10022458 locus=Lus10022458.g ID=Lus10022458.BGIv1.0 annot-version=v1.0 ATGGCGAGCTTGCAGCTGTTTAGACAACAGGAAGGGGCGGTGGAGAGGCAGAGTGAGATCCGGAGGAGTCCTGAAGCCAAGCTCGGGATGAAAGTGGAAG ATCTGTGGGACGTTCAGGAGCCGCAGCTCAGTCCTACCGAGAAACTCAATGCTTGCTTTGAGAATATTCCAGTTTCTGCTTTCCCTGTTTCTTCTTCCCG AGTGATTGAGATAAAATCGGATACGACTTTGGCGGAGGCGGTGAGAATTCTGGCCGATAACAAGATTCTCAGCGCGCCCGTACTCAACGTTGATGCGTCG GAGGACGCTAGTTGGATGGATAGGTACATTGGAATCGTGGAGGTTGCTGGTATAGTGGTTTGGATCTTGCAACAGTCAGAACCTCCGTCTCCTAGGAGTC CGAATTCCGGAACCTCTGCTGCATTGAAGGAGAATGGATTAACTAATGCTGCAGGAGTTGGGATCTTGGGACCTGAAGATGCTCAAGCAACTTCTGGAGA CTTTTTCGAAGATCTAACTTCCTCCGAGTTCTATAAGAATATGAAGGTTCGGGACATCTCAGGATCTTTCCGTTGGGCTCCGTTTCTCGCTTTACAGAAA TCAAACTCTTTCTTGACAATGCTGTTATTGCTGTCCAAATACAAAATGAAGAGCATTCCCATTGTTGATCTGGGTGATGGGAAGATTGACAACATCGTCA CACAATCTGCTGTTATTCACATGCTGAACGAATGTGCAGGGCTTCACTGGTTTGAGAGTTGGGGAGCCAAGACCATTTCAGAAATTGGCCTTCCTCTGGT CTCCTATAATCAAATTGTTAAGGTGCACGAGGATGAACCAGTACTCCAAGTATTTAAGCTGATGAGGAAAATGAGAATTGGAGGCGTACCTGTTATGGAC GCTGACGGCAAGAAGGCTATAGGAAACATCAGTCTAAGAGATGTTCAGTTCCTGCTAAATGCTCCAGAAATTTACCACGAATTCAGATCTATCACAGCCA AGAACTTTCTGATGGCTGTTAGGAACTACTTGAAGGATCACAAGGAAGACACACCAATGGTAAGCGGGATGATAACGTGTACTGGGAGAGACAGCATTAA GGAATTGATAAAGAAGCTGGACAGCAAACAAATTCACAGAGTATACGTTGTGGATGATGCTGATAATCTGCAAGGGGTCATTACTCTAAGAGATGTAATC TCAAGGCTTGTACATGAACCCCGCGGCTACTTCGGCGATTTCTTTGACGGAGTTCTCCCACTCCCTGCTAATAGTAGAGTTTGA
AA sequence Show only first row Show all	>Lus10022458 pacid=23171686 polypeptide=Lus10022458 locus=Lus10022458.g ID=Lus10022458.BGIv1.0 annot-version=v1.0 MASLQLFRQQEGAVERQSEIRRSPEAKLGMKVEDLWDVQEPQLSPTEKLNACFENIPVSAFPVSSSRVIEIKSDTTLAEAVRILADNKILSAPVLNVDAS EDASWMDRYIGIVEVAGIVVWILQQSEPPSPRSPNSGTSAALKENGLTNAAGVGILGPEDAQATSGDFFEDLTSSEFYKNMKVRDISGSFRWAPFLALQK SNSFLTMLLLLSKYKMKSIPIVDLGDGKIDNIVTQSAVIHMLNECAGLHWFESWGAKTISEIGLPLVSYNQIVKVHEDEPVLQVFKLMRKMRIGGVPVMD ADGKKAIGNISLRDVQFLLNAPEIYHEFRSITAKNFLMAVRNYLKDHKEDTPMVSGMITCTGRDSIKELIKKLDSKQIHRVYVVDDADNLQGVITLRDVI SRLVHEPRGYFGDFFDGVLPLPANSRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	1.0	0.9598
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	2.4	0.9111
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	3.0	0.9077
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	3.7	0.9089
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10020070 [exp]	3.9	0.9196
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10017764 [exp]	4.0	0.9079
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	4.5	0.9186
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	4.7	0.9260
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10042348 [exp]	4.7	0.9057
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	6.5	0.8986

Compare expression of checked genes

Lus10022458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.