Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50380 731 / 0 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT3G14090 414 / 1e-137 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G72470 414 / 1e-137 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT1G54090 397 / 7e-131 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT3G29400 355 / 3e-114 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1) AT5G13150 352 / 2e-113 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G52340 348 / 9e-112 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 340 / 5e-110 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G58430 332 / 9e-106 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G61010 299 / 6e-93 ATEXO70E2 exocyst subunit exo70 family protein E2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016764 [exp] 1055 / 0 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 431 / 2e-143 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 401 / 5e-135 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10035146 [exp] 392 / 2e-128 AT3G29400 579 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10031956 [exp] 385 / 2e-125 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1) Lus10043432 [exp] 340 / 3e-108 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10021283 [exp] 337 / 1e-107 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10011334 [exp] 328 / 2e-104 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 327 / 1e-103 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094800 [exp] 828 / 0 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 825 / 0 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 444 / 6e-149 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 436 / 3e-146 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093966 [exp] 419 / 3e-139 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.015G058200 [exp] 387 / 4e-127 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2) Potri.008G017800 [exp] 367 / 6e-119 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.013G152900 [exp] 363 / 2e-117 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.010G241800 [exp] 357 / 6e-115 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.001G060700 [exp] 356 / 1e-114 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10022459 pacid=23171781 polypeptide=Lus10022459 locus=Lus10022459.g ID=Lus10022459.BGIv1.0 annot-version=v1.0 ATGAAGGGGACGGACCTCTCGCAGCTGGATATGGCCGCCGCTGCCCCCAGGCTTGCTTCTCGCATTTCCCTCCCCTCCTGGTACGACTGCCCCGAAGATG CCGTCGAGTATTTGACTGCTGTCGATGAGATGCTTGACTTGCTCGACAACCTTTCCCTGAAGGAGGACGATACTAACGAGGTGGTCGACCGAGCAGAGAC TGCCGTCCAGGTTGCTATGACAAGGCTCGAGGAAGAGTTTCGCCATATACTCACCAGAAACACCGTCCCGCTCGATGCCGACAGGCTCTACGGATCTATT CGGAAGCTTCCTCTTGCTTTGCTCTCCAACGAGGGTGGTGGTGGTGATATCATTGAGGATGATTTTGACACTAGTTTTGGCGAGGTGGATAGTGCTCGTG GCAGTGGATATTTCCACGAACGTGGCAGTGGGTATTTCCACGACAGGGGAGCTAGTTTGGGGGATGACATTTGTGTTGATTTGATCAATCCAGATGCTAT TTGGGAGTTGAAGGAGATTGCAGAGCGGATGATCCGGTCTGGGTATGAGAAAGAGTGTGTTCAGGTTTACTGTAACGTTAGGAGGGAAGCTTTAGACGAG TGTTTAGCTATACTGGGTGTTGAGAAGCTCAGTATAGAAGAAGTTCAGAGGATTGAGTGGAAAAGTTTGGATGAAAAGATGAAGAAATGGGTGCAAGCTG TTAAGATCGGAATTAGAGTACTTCTAACTGGGGAAAGGAGATTGTGCGATCATATCTTTAGTACTTCTGATACTGCTAAGGAGATTTGTTTCAATGAAAA CGCTAAAGGGTGTGTAATGCAGTTGCTAAACTTCGGGGAGGCTGTGTCTATTGGGAGGAGGTCATCAGAAAAGTTGTTTAGGATATTGGACATGTATGAT GTACTGAGAGATGTGATTCCGGACTTGGAGATGATTGTAACAGATAACTTTCTGTGCAGTGAGGCTAAGGGAGTTCTATCTGGGCTTGAGGAGGCTGCTA AGGGAACTTTCTCTGAATTTGAGAGCGCTGTGCAGAGTGAGAACTCCAGGAAGCCTATGTTAAGCGGAGAGATTCATCCGCTTACAAGGTATGTGATGAA CTATTTGAAATTAGTTGTTGATTATAGCCAGACATTGAATTCCCTTTTGGAGAAGGATGATGACAAGGAGGATGAAGATGGTGGCGGGGAGGAGGAGGAG GAGATTGCAAGTCCATTATCAAGGAGAGTATCGGCACTGTTATCGACCTTGGAGTTGAATCTCGAGGCGAAATCGAAACTATACGAGGATGGTGCTATGC ACTACATATTTCTGATGAATAATATATTGTACATAGTTCAGAAAATAAAAGATTCGGAACTTATAAAGCTTGTAGGAGATCAGTGGGTGAGGAAACGGAG AGGTCAGATACGGCAGTATGCTACATCGTATCTAAGAGCTGCTTGGAGCAGGACACTGTCATGTTTGAAAGATGAAGGGATAGGTGGAAGCTCCGGGAAT GCGTCTCGAGTTGCATTGAAGGAAAGGTTTAAGAATTTCAATGCGTGCATTGAAGAAATATACAGGGTTCAAACAGGTTGGAAGGTACCGGATTCGCAGC TTAGGGAAGAGCTAAGGATCTCAATATCTGAGAAGGTGATTCCAGCATATAGAGCATTTGTTGGGAGGTTTGGAAGCCAGCTAGAGAGTGGGAAGCATTC GGGGAAGTACATAAAGTTCACACCAGAGGATTTGGAGAATTACTTACCAGATCTATTCGAGGGGACACCTCTGGTTATTCACCACGTCAGAAGAAAGAGT TAG
AA sequence Show only first row Show all	>Lus10022459 pacid=23171781 polypeptide=Lus10022459 locus=Lus10022459.g ID=Lus10022459.BGIv1.0 annot-version=v1.0 MKGTDLSQLDMAAAAPRLASRISLPSWYDCPEDAVEYLTAVDEMLDLLDNLSLKEDDTNEVVDRAETAVQVAMTRLEEEFRHILTRNTVPLDADRLYGSI RKLPLALLSNEGGGGDIIEDDFDTSFGEVDSARGSGYFHERGSGYFHDRGASLGDDICVDLINPDAIWELKEIAERMIRSGYEKECVQVYCNVRREALDE CLAILGVEKLSIEEVQRIEWKSLDEKMKKWVQAVKIGIRVLLTGERRLCDHIFSTSDTAKEICFNENAKGCVMQLLNFGEAVSIGRRSSEKLFRILDMYD VLRDVIPDLEMIVTDNFLCSEAKGVLSGLEEAAKGTFSEFESAVQSENSRKPMLSGEIHPLTRYVMNYLKLVVDYSQTLNSLLEKDDDKEDEDGGGEEEE EIASPLSRRVSALLSTLELNLEAKSKLYEDGAMHYIFLMNNILYIVQKIKDSELIKLVGDQWVRKRRGQIRQYATSYLRAAWSRTLSCLKDEGIGGSSGN ASRVALKERFKNFNACIEEIYRVQTGWKVPDSQLREELRISISEKVIPAYRAFVGRFGSQLESGKHSGKYIKFTPEDLENYLPDLFEGTPLVIHHVRRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	0	1
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	1.0	0.9280
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	1.4	0.9218
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	4.2	0.8985
AT5G03990			unknown protein		Lus10016362 [exp]	4.9	0.8810
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	5.7	0.8979
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004541 [exp]	6.3	0.8346
AT5G62440			Protein of unknown function (D...		Lus10009570 [exp]	6.5	0.8582
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	7.1	0.8975
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	7.1	0.8700
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	7.9	0.8402

Compare expression of checked genes

Lus10022459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.