Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60160 800 / 0 Zn-dependent exopeptidases superfamily protein (.1) AT5G04710 580 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016765 [exp] 958 / 0 AT5G60160 774 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Lus10034142 [exp] 544 / 0 AT5G04710 796 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092700 [exp] 823 / 0 AT5G60160 818 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Potri.012G095200 [exp] 807 / 0 AT5G60160 810 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Potri.008G021700 [exp] 579 / 0 AT5G04710 785 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Potri.010G237667 [exp] 40 / 0.0002 AT5G04710 54 / 7e-10 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF02127 [flax] [poplar] Peptidase_M18 Aminopeptidase I zinc metalloprotease (M18)
Representative CDS sequence Show only first row Show all	>Lus10022460 pacid=23171769 polypeptide=Lus10022460 locus=Lus10022460.g ID=Lus10022460.BGIv1.0 annot-version=v1.0 ATGCCGAAGCAAGTTAACGAATGCGATGGACTCTCCATTGCTTCTGATCTCATCGAATTCTTGAACGCCTCCCCCACCGCTTTTCATGCCGTCGATGAGG CGAAGAGGAGACTGAAAAACGCGGGATTCGAGCAAATATTCGAGAAGGAGGATTGGATATTGGAAGCTGGGAAACGATACTTCTTCACTCGCAATCACTC CACTATCGTTGCGTTCGCCGTTGGCAAAAAATATGTTGCTGGCAATGGATTTTACATAATTGGTGCGCATACAGACAGCCCTTGTCTAAAATTGAAGCCT GTTTCCAAGGTAACCAAAGGTGGCTACTTAGAGGCTGGAGTTCAGCTGTACGGAGGAGGTCTATGGCATACATGGTTCGACCGCGACTTGACAATAGCTG GAAGGGTGATGGTTAGAGAGGATGATGAAAATGGCTCTGTTTCCTACTCACAGAAACTAGTTAGGATTGAGGAGCCTATTATGCGAATCCCTACACTTGC AATCCACCTTGATAGGAACGTTAATAGTGATGGATTTAAAATTAATACACAGAGCCATCTTGTTCCAGTTTTAGCTACGCTAGTTAAGGCTGAGCTGAAT AAAATGGTTGTGAAGAATGGTCCTGCTGGAAGTGGAGATACAAATGAAGGACAAAAGGCCGATAAAGAAAGCAATACAAGTAACTTGAAGCATCATCCAC TTCTATTAGAGATCATTGCACGTCAAATTGGCTGCAAACCAGTTGATATATGTGATTTTGAACTGCAAGCTTGTGATACACAGCCAAGTGCAATAGGCGG GGCTTTAAAGGAGTTCATTTTCTCTGGAAGGCTTGATAACCTCTGCATGTCCTTTTGTTCTCTTAAGGCACTAATAGATGCAACATCTTGTGATAGTGAG CTTCAAAATGAGAGTGGCGTTAGATTAATTGCGTTATTTGATCATGAGGAGGTTGGATCCAGTTCCGCACAAGGTGCAGGATCTCCTGTCATGCTTGATA CTCTAACGCGAGTCACAGGATCCTTCAGCTCGGATTCCAAGCTTCTTCAAAAGGCAATCCAGAAGAGCTTCCTCGTATCTGCGGACATGGCACACGCCCT TCATCCAAATTATTCGGACAAACATGAAGAGAATCATCAACCTAAGTTGCACGGAGGCCTGGTAATCAAACACAACGCTAATCAACGGTATGCAACGAAT GCAGTCACATCATTCATTTTCAGGGAGATAGCAACAAAGCACAACCTTCCAGTTCAGGATTTTGTGGTTCGGAATGACATGGGGTGTGGCTCAACCATTG GTCCAATCCTAGCGAGTGGGTTGGGAATCCGTACAGTTGACGTGGGGGCTCCTCAGCTATCCATGCATAGCATTAGAGAAATGTGTGCAGTGGATGACAT CAAACACTCGTATCAACATTTTAAGGCATTCTTCCAAGAGGTCTGTCATCTTGATTCCAAGATTCAGATTGACATATAG
AA sequence Show only first row Show all	>Lus10022460 pacid=23171769 polypeptide=Lus10022460 locus=Lus10022460.g ID=Lus10022460.BGIv1.0 annot-version=v1.0 MPKQVNECDGLSIASDLIEFLNASPTAFHAVDEAKRRLKNAGFEQIFEKEDWILEAGKRYFFTRNHSTIVAFAVGKKYVAGNGFYIIGAHTDSPCLKLKP VSKVTKGGYLEAGVQLYGGGLWHTWFDRDLTIAGRVMVREDDENGSVSYSQKLVRIEEPIMRIPTLAIHLDRNVNSDGFKINTQSHLVPVLATLVKAELN KMVVKNGPAGSGDTNEGQKADKESNTSNLKHHPLLLEIIARQIGCKPVDICDFELQACDTQPSAIGGALKEFIFSGRLDNLCMSFCSLKALIDATSCDSE LQNESGVRLIALFDHEEVGSSSAQGAGSPVMLDTLTRVTGSFSSDSKLLQKAIQKSFLVSADMAHALHPNYSDKHEENHQPKLHGGLVIKHNANQRYATN AVTSFIFREIATKHNLPVQDFVVRNDMGCGSTIGPILASGLGIRTVDVGAPQLSMHSIREMCAVDDIKHSYQHFKAFFQEVCHLDSKIQIDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60160			Zn-dependent exopeptidases sup...		Lus10022460 [exp]	0	1
AT5G60160			Zn-dependent exopeptidases sup...		Lus10016765 [exp]	1.0	0.8739
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	5.9	0.7887
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10021798 [exp]	8.2	0.7494
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	9.5	0.7996
AT1G63220			Calcium-dependent lipid-bindin...		Lus10002235 [exp]	12.5	0.7832
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	14.7	0.7774
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	17.5	0.7671
AT5G39570			unknown protein		Lus10029322 [exp]	18.7	0.7374
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	22.1	0.7505
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	25.5	0.7119

Compare expression of checked genes

Lus10022460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.