Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66810 725 / 0 unknown protein AT5G66850 530 / 4e-173 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 327 / 2e-95 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 313 / 4e-93 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G09000 243 / 4e-68 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT4G08500 234 / 2e-65 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G54960 233 / 3e-65 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08470 225 / 8e-63 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT3G06030 223 / 2e-61 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08480 219 / 2e-59 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016766 [exp] 1258 / 0 AT5G66810 766 / 0.0 unknown protein Lus10016768 [exp] 757 / 0 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 699 / 0 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 689 / 0 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10021766 [exp] 429 / 8e-133 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10032279 [exp] 352 / 2e-104 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 352 / 3e-104 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 339 / 2e-100 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 333 / 1e-97 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G137100 [exp] 892 / 0 AT5G66810 748 / 0.0 unknown protein Potri.007G039800 [exp] 587 / 0 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 581 / 0 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 428 / 9e-134 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 422 / 4e-132 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.012G143900 [exp] 345 / 2e-101 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 343 / 2e-101 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 340 / 6e-100 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 337 / 6e-99 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 306 / 1e-90 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022461 pacid=23171667 polypeptide=Lus10022461 locus=Lus10022461.g ID=Lus10022461.BGIv1.0 annot-version=v1.0 ATGAAGGATCGCCGTAGCCTCTGTAGCAGCAGCACATTCGGCTCCCGTTCTAGTTCCTCCGACGGCCCCAGGCTCATCCGCCAGAGGAAGCTCCGGCACC TATCTGATAAGGATGTTGCCAGCAGCGACGAGCCTCTTCAACTTTTGCGCTCTCACAGTACTTCCTCGTCACCGCCGCGGACCTCTTCAAGGCTGCCGAC CTCGCCCGTCCCAGTGCCGGTGCCGGTGCCTCTGCCATTACCCCAGCCGTCGCGTCAGAATTCCAATACCGGATTCGTGGACTTGCGGTTGCCGTCTCCC AAGGAGAGGGAGAAAGAGAAGGACCGCGATTGCTTTAGAGAGAAAAGTAATGGTGGTGGAGATTTCCCTCTCTACACTACCCCGCCTTCCAGACTATTGG TCGGGCGAGAAACTAGGAAGACAACAGATCAGCCAAGGGAGAAGAGATCAAATAAACCGGCGGTGGCAGGTTTGGACTTGAGCAGTTGCAGAGTTTTCAA TCCAGCAAATAGTTCGTCCAACAATCCATATGCAAGTCCTGAAATCAGTCCGCAAAGAATAAGAAATGCCTTGAGCACATCTCCCTACTACAATATGATT CCAAACGGGAAGCAAGGTTGGTCTGTACCTGAGATGTCTACACCAGGGCTCTCCCCACCGGCATTTTTTGATTGCACGACATTTGGTGGTGATAATTCTC CCTTTCCTAGCCCGGCAAATACAAGTCCTCCATCTCCGGTGACTGCTAGAACATCATTTGAAATTCCAGCTGCTCGGCGTGACAGCAACACAAATGTAGA AGTCCACAGGTTACCTCTTCCCCCTGGAGCAAATCTGATATCTCCAAGGGGGACAACCCCTGCTCCCCAAGTCGCTTCTAAACAAGACTTCATACCCATG AAAAGTCAGTGGCAGAAGGGAAAACTTATTGGACGTGGAACATTTGGAAGTGTGTTTGCTGCCACCAACAGGGAAACTGGAGCATTGTGTGCCATGAAAG AGGTTGATATCTTTCCTGAAGATCTGAAATCTCAAGAATGCATTAAGCAACTAGAGCAGGAAATTAAAATTCTTAGCAAACTGAAACATCCCAACATTGT GCAGTATTATGGTAGTGAAATAGTTGAGGGCCACTTCTATATTTATTTAGAGTATGTTCATCCAGGTTCAATCAATAAGTATGTCCGTGAACATTGTGGA GCAGTAACAGAATCAATTGTACGTAGTTTTACCCGCCATATCTTATCTGGGTTGGCATACCTGCATACTATGAAGACAGTACATAGGGACATTAAAGGGG CAAATTTGCTTGTGGATGCATCTGGTGTTGTGAAGCTAGCTGATTTTGGGATGTCAAAGCATGTTACCGGACAAGTTGCTGAACTTTCACTGAAGGGGAG TCCATACTGGATGGCACCAGAGCTTATGCAAGCCGTAATTCTGAAGGACAATAACTCTGATCTTGCTCTTGCTGTCGACATTTGGAGTTTAGGCTGCACT ATCATTGAAATGTTTACGGGAAAACCTCCTTGGAGCGAGTTCGAGGGTATACAGGCCGCAGCTATGTTCAAAGTAATAGAAGACACTCCAGCTGTACCTG AAACATTGTCAGCTGAAGGCAAGGACTTCCTTGTTTGGTGTTTCAAAAGAAACCCAGCAGAGCGGCCATCTGCTTGCTTGTTATTAGAACATAGGTGGTT GAAACACCTCATCTGCCCCGCAAATGAATGGGTGGAGATCAATGTCAATTGGGATGCTCTCGACGCTCTTGTTATTGATTTTGCAACTTCCGAGAATTTG ATTGAGCAGCAGTCTCTGGATTCCCCTGCTTCCCCGTTTTCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCCTCCGTCTCTTCCTCTTCGTATCATT CCAGGCTGATCATTCGCCAGATCAGGCTGTGCTTGGAGTCCGGAAACATCGATTCCGGCATCCATCTTCTCCGAGCTCACGCTCCTTCCATTCTCGGCAA TCACCGGCTTCTATTTCGCTTGCAGAAACAGAAATTTATCGAGCTGTTAAGGGGAGGTACGGAAGAGGCCAGAGATGCCGCACTTTATTGCATGAGAACG GCTCTTGCTCCCTGCGCTCTTGATGCTTATCCGGAAGCATATGAGGAATTCAAGCATGTTCTCCTTGCCCTTATATATGACATAAATGATCACACTTCTC CTGTGGCAAATGAGTGGTCTGAAAAGAAGCGGAGTGAAATTGCTGGGTTGATGACTTCTGTTTTAAGAGCTCATTTGCACGCATATGATCCAGTCTTCTC GATGACAGTGCGATATTTGATAAGCATACACAAAAGCTTTTGCTTTCAACAAGGAATGACATCCCCAATTTCAGACCTAACTGAGAGGTTGCTCCTTGAG GAGCGTGACCCTCCAGCTGTGCCAGAGGAGAGTTATTATGAGGCTCCTCCATTTGATGAGGTCGACATACAAGCTCTTGCACATGCGGTTGAGCTAACAA GGCAGGGAGCTGTTGATAGCTTGAGATTTGCTAAGGGAAGCTTGTTTCAGGCGTTCCAGAATGAATTATGTCGAATGAAATTGGACGTATCCATGGTAGA TGAACTTGTTCGAGAGTATTGTGTTTATAGAGGCATCATTGACTCGGGTTATGTGTCATTTTCTGGATGCAAAGTAAATCAATCGGAACCGAGTCACATG CCATCTCAAAACAATTCTCCTGAAGTGGACCAGGGTACCAGTAAGCATCCAGATGGTGAAAATTCTGTGATCACGATGCCAATGGATGTTTCTTCAGTAA ACTCCAACAGCATGCCAGCTGGGACTGATACTGAGTTGAGAGATGCTTCTGAATCAGCTAGGAATTGTGCAGATTGCAGTACTAGTGGGATGCAGCAACC TATCACTTCAAAACTTGTTCAAAGAAACGGAGAGAGGAGCAAGCGGAAGCGTTGGAGGGGTCGACAAGATGACCATGAATATCTCTCTTCTGGTGTAGCT TGCAGTCAGCAAGATCTTGATGGGAGAAAACACCAGGGAATAGACAAACCGTCCACTGAAGAAGATGTAGACAACATGGATGATAAGTATGAGATTCTGC TGGGGATCAAGGATCTAGCAGCTAGAGGCATGGCTAAAGAGGTTGTGGAACAAATTAATACCTTGGATCCGAGCTTCTTTTCACAGAATCAGGGCTTGCT CTTCCAGTTAAAACAGGTTGAATTCCTCAAGCTTGCCAGTGCCGGTGATCACTCAGGTGCTCTAAAGGTGGCCTGCTCACATATGGGTCCTTTAGCATCT AGTGATCCTTCTCTTCTGAAGCCCTTGAAGGAGACTCTAGTTGTGTTACTCCAGCCACAGCAAGAGATGCTCGGAAAAGGCTTACCTTTAAACGCTCTTT CGAATTCCCTCCAGGTTGCAATTGGTACAAGGCTTGGTATTGAAGAACCACAACTGATGAAGTTAATTAGAGCAGCCCTTCACAGTCACAGTGAATGGTT TAAGCTGCAAATGTGTAAAGATCGCTTTGAGAATCTTATGAGGATAGATTCCCTGAAAGAAGTAGATACTCGTTTGCTCTCAGCTAGCTCCATGTCCAAG TCCAATGGAGATAGTTGCTCCTCCCAAGTCACAACGACATCTTCGAGTGTGAGGTTGGCTGAAGATGGAACGAGCCCGACTCAAATTTCGTCTGGAGATA TATGTGATGAGAGTGCAATACTCAAAGTGATGGAGTTTCTCGCCTTGCCAAGGGCTGACGCCATCCATCTTCTCGCACAGTACAACGGAAACGCGGAGAC TGTAATCCAACAAATATTTGCATAA
AA sequence Show only first row Show all	>Lus10022461 pacid=23171667 polypeptide=Lus10022461 locus=Lus10022461.g ID=Lus10022461.BGIv1.0 annot-version=v1.0 MKDRRSLCSSSTFGSRSSSSDGPRLIRQRKLRHLSDKDVASSDEPLQLLRSHSTSSSPPRTSSRLPTSPVPVPVPVPLPLPQPSRQNSNTGFVDLRLPSP KEREKEKDRDCFREKSNGGGDFPLYTTPPSRLLVGRETRKTTDQPREKRSNKPAVAGLDLSSCRVFNPANSSSNNPYASPEISPQRIRNALSTSPYYNMI PNGKQGWSVPEMSTPGLSPPAFFDCTTFGGDNSPFPSPANTSPPSPVTARTSFEIPAARRDSNTNVEVHRLPLPPGANLISPRGTTPAPQVASKQDFIPM KSQWQKGKLIGRGTFGSVFAATNRETGALCAMKEVDIFPEDLKSQECIKQLEQEIKILSKLKHPNIVQYYGSEIVEGHFYIYLEYVHPGSINKYVREHCG AVTESIVRSFTRHILSGLAYLHTMKTVHRDIKGANLLVDASGVVKLADFGMSKHVTGQVAELSLKGSPYWMAPELMQAVILKDNNSDLALAVDIWSLGCT IIEMFTGKPPWSEFEGIQAAAMFKVIEDTPAVPETLSAEGKDFLVWCFKRNPAERPSACLLLEHRWLKHLICPANEWVEINVNWDALDALVIDFATSENL IEQQSLDSPASPFSSPSPSSSSSSSSVSSSSYHSRLIIRQIRLCLESGNIDSGIHLLRAHAPSILGNHRLLFRLQKQKFIELLRGGTEEARDAALYCMRT ALAPCALDAYPEAYEEFKHVLLALIYDINDHTSPVANEWSEKKRSEIAGLMTSVLRAHLHAYDPVFSMTVRYLISIHKSFCFQQGMTSPISDLTERLLLE ERDPPAVPEESYYEAPPFDEVDIQALAHAVELTRQGAVDSLRFAKGSLFQAFQNELCRMKLDVSMVDELVREYCVYRGIIDSGYVSFSGCKVNQSEPSHM PSQNNSPEVDQGTSKHPDGENSVITMPMDVSSVNSNSMPAGTDTELRDASESARNCADCSTSGMQQPITSKLVQRNGERSKRKRWRGRQDDHEYLSSGVA CSQQDLDGRKHQGIDKPSTEEDVDNMDDKYEILLGIKDLAARGMAKEVVEQINTLDPSFFSQNQGLLFQLKQVEFLKLASAGDHSGALKVACSHMGPLAS SDPSLLKPLKETLVVLLQPQQEMLGKGLPLNALSNSLQVAIGTRLGIEEPQLMKLIRAALHSHSEWFKLQMCKDRFENLMRIDSLKEVDTRLLSASSMSK SNGDSCSSQVTTTSSSVRLAEDGTSPTQISSGDICDESAILKVMEFLALPRADAIHLLAQYNGNAETVIQQIFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66810			unknown protein		Lus10022461 [exp]	0	1
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	2.2	0.9289
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	7.2	0.9181
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	11.0	0.8971
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	11.5	0.9153
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10008607 [exp]	12.3	0.8540
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	13.2	0.9001
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10018422 [exp]	17.3	0.8893
AT2G32970			unknown protein		Lus10035309 [exp]	19.7	0.8865
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	21.2	0.8956
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10002740 [exp]	21.9	0.8873

Compare expression of checked genes

Lus10022461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.