Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016767 [exp] 417 / 2e-146 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G135700 [exp] 159 / 8e-46 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10022462 pacid=23171715 polypeptide=Lus10022462 locus=Lus10022462.g ID=Lus10022462.BGIv1.0 annot-version=v1.0 ATGGAAGATGATGGTTTGCAACTGGAACTCAATGGACGAGAACATCCGACGACGGTGAGGTCGCAGATGAAGGAACTGATCAAGACCAATGAGGAATTGA AGATCACCAAAGACCAAGCGATGCAGTCATGGCTGGATTCCAAGCCCTTAATCGACGATCTCGAGAAACTACAGTCAGGTGTTGACGCAGCCAAAAACAG GGAATCCAACTCTAAAGCCGTGATATCGGACCTGCAATCGGAGCTCGAGGACAATCAGCGGCGGATTCGGTCTAAGATGGAAGAGGAGCTACAGGCAATG AAGGCCACCAGTGAATTGACTAAGGCCGTTGACCACACGTGCAAGGATCTAGAGGCGATCAAGCTGGAAGCCGACGAACACCGCAGGGAGAGACTGAAAC TGAAGCAGCTGCTCCGGATTCGTCGCCAGACGCTCCGATCCCTTCAATTGAAGCTACGTGCCGTTAGGATCGAGGCCGAGGCGTCCGTCACGTCGTTGCA GGACGCGTCTGCGAACATCGACATGTCGAAGGCGGAGAACAACAACAACAGCATACAATTGACCGCCGATGAGTACGTCTCGCTGGCTCGTAGGGCACAG GAGGAGAAGTCGCTTTCACAGTGGAGAGTCACTGCGGCGGAAGAGCAGAAGCTGGAAGCGGAAGCCAACAAGAACATCGCGCTGTCGAGGTTGAGTCAGG TTTACAAGACGAAGAGGAGCCGGCAATGGGAGGAGGAGGATGAGGAGGATGGTATAGTGGAAGACGATGACGAGGCAACGGCGGCGGTGGCGGAGGGGAG GAGAGGAGATTCAAGCGGCAGAGTTGGAGGTGAGATTGTGATACCGAAAGCTAGAGCACGGGCGATGAGGGAGGAAGAATGTAAGATGCGCGAGTCTGCT AGGAGTGGTGGTAACAACAACAACAGCAGCAGCAGCAGGAAGAGAATGGTAGTGAAGCAGAAGAGGAGGAAGAAGCAATCGTTTTTAGGTAAAATCACCA ATTTAATCAACGAAATTAAGAAGTGGTTCCGTTGA
AA sequence Show only first row Show all	>Lus10022462 pacid=23171715 polypeptide=Lus10022462 locus=Lus10022462.g ID=Lus10022462.BGIv1.0 annot-version=v1.0 MEDDGLQLELNGREHPTTVRSQMKELIKTNEELKITKDQAMQSWLDSKPLIDDLEKLQSGVDAAKNRESNSKAVISDLQSELEDNQRRIRSKMEEELQAM KATSELTKAVDHTCKDLEAIKLEADEHRRERLKLKQLLRIRRQTLRSLQLKLRAVRIEAEASVTSLQDASANIDMSKAENNNNSIQLTADEYVSLARRAQ EEKSLSQWRVTAAEEQKLEAEANKNIALSRLSQVYKTKRSRQWEEEDEEDGIVEDDDEATAAVAEGRRGDSSGRVGGEIVIPKARARAMREEECKMRESA RSGGNNNNSSSSRKRMVVKQKRRKKQSFLGKITNLINEIKKWFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022462 [exp]	0	1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	4.4	0.8982
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	12.0	0.8823
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	13.5	0.8726
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	17.7	0.8844
AT3G25120			Mitochondrial import inner mem...		Lus10013127 [exp]	17.7	0.8612
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Lus10004358 [exp]	18.2	0.8579
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	19.8	0.8796
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	20.0	0.8871
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	22.5	0.8774
AT3G19660			unknown protein		Lus10012438 [exp]	24.9	0.8829

Compare expression of checked genes

Lus10022462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.