Plant FIBer expression Database

Lus10022468 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50430 331 / 7e-104 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016771
[exp]
236 / 3e-69 AT5G15940 202 / 3e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G133500
[exp]
518 / 9e-176 AT3G50430 429 / 4e-142 unknown protein
PFAM info
Representative CDS sequence
>Lus10022468 pacid=23171785 polypeptide=Lus10022468 locus=Lus10022468.g ID=Lus10022468.BGIv1.0 annot-version=v1.0
ATGACCGTTGATTCGGAATTGCCTCGTCTTTGCAGCTTGCTCGATGAGTTTCTTAGTTCTTCCAACGTTAGTAGTGTAACAGCTAGCTTTGCAGATTTGA
GCTTGCTTTTCCGTTCACTTGAATTGTTTTTTTCTTCACAGAACCTGGACTTTGCGTCTGTGCGTTTATCCAAAGAAATGGAGAAGGATCTTCTGATTGC
TCTCTCTAAGGTCTATACAGAAATCCAGGCCTGGATTCGTGAACTGGAGGCTGATTCTGATGAGGAGACCATTGTTTCTGAATGTTTATTTGAGGCTGCA
CATGAGGATCATAACTGTTTGATGAGAATCCTGGATGACTTGATTCTTCTACTTACAGTGGACAGTCAGTTCATTAAACATTCAGTTGGAAAGATTATTG
TCACCATTTTTGAGTTCTTGGATCTATCTGGAAGTAAATCCGATGCTTTCATTGATTCACTGTTCGTGTGCCTGTCATTGATACTCAACCGTCTATTGTC
TTGTTCTGTACCTCCGAGGAGTGCTGGGAATTCAGATTTTGATTCCTCAGTTTTAGCTGTCTCGATTAAGGGACTGGGGCGTGCTGACTGGTCTACTGCA
GCTCATATGATCCAAATCTTGCGTAATGTACTGAAAAACTTGAAGCAAGAATATGACAACCATCTTCAGGCCTATGAGAAATCTGTTTATTCTTTTCTAT
TAAACGTTCCCTGGGATCTCGTGGATAATAACTGTGCGGAGGAACCAAAAGTTTTGTTCTTAGGGAGTTTGGTCCCGTTCGTTTGTTCATTGGTTGAACA
AGGCACTACTCCAGAAACCAAAGTTCATCTCCAAGATCAGCATTCAACTATCTCCATAGTTGTCAATCTTGTGCCTAAGCTTTTATGTTGGTGTGTTGGC
AAGCGAGAAACTATTGAACAGTCCACGTTCCACTACTTTACTCACAAACTGTTGATGCTAATGTTGAGGCTTAGTTACGTAACTCATTTAAGTAGCACCA
CGCTTGTCTCCTGGTTGCAACTTCTCCATGATTATTTTGAAGAGCTTCTGTTAAAACCCATTTCTAGGGGAAAGCCTGGGCAGTATAATTCCTTAGAAGG
CTCTCCATTTCTATCCAGCCTCCTTGAGGAAGAAACAAAAGCCATGCGTTCCCTTCATTCACAAAGGCAGGCCATACTCCTATTCCTTCGGTGCTGCCTC
AGCTTGACCAGCTTGACGGGAGAGACTATCTATCAATGCCCATCGACTGATAATTCATTTTCGACTATTGACTGCTTATCTAACCTGGATTCTTCTACTA
GAATGAAAGGAATTACAGAGCTCTACATATGGATTCAACACCATCTGCAAAGTGACTTCACTTTTGAATCTGAAACGTGCATGGACGATCATATACTTTT
TGCAGGATCTTTTCTCCAGCTATACATGCACGAGGATGACTTATTATTTCAGGTTCTTCTGCAGTTGGTTAGTGCATCATCCTGTCTGGAACAGCAGACA
GGGGTTGGGAAGCATATGTTTCATGATATAAAAAATGACATTGGTTATATTGTTTCAAATCTTTTTAATCCAGTGAAATTGTTCCATCTATTCCTGTCAG
AGCTGCACTATGATCATCAGGTGCTTCTTGATTACCTTATATCCAAAGATCTAGGCATCAAATGTGCTGAATATCTGTTGAGGTGTTTGCGGGCTATATG
CAGTTCGTGGCATTTATTCATAGAGTTCTCTGTTGAAGGGAAAACCACGGATGAATTAGCTTGGAAGAAACGGAAAATTTTATCATATGGCTCCACAATC
GAGGAAGAAGAATCATCAGTGCTGACAAAAGATGTTCCTATTTCTAGAGAGAAACTGAGGGTAGAGTCTGCTTATAGTTTCAACCAACATGAAACTATAA
AACACCAGTACGTTAAGGCAAAAAATTGTCTGCTGTCCCTGAAATTTTCTATAGAACATCTCCAGCGAAAGAATCTGTTTCCGTATAACCCCAAAGCACT
GTTAAACCGGTGCGTGATTGTCCATGCTTCTGCATTTTCCTTGTACTGTTGTTATATTTGTCCCTGCTTCCAACCTAACAATAAGAGACAAACCATGTTG
TGTTTGAATTCATACTGTCAAACAGGAAATCCTACACGGATACTTCTTCATCAACTGCACTGA
AA sequence
>Lus10022468 pacid=23171785 polypeptide=Lus10022468 locus=Lus10022468.g ID=Lus10022468.BGIv1.0 annot-version=v1.0
MTVDSELPRLCSLLDEFLSSSNVSSVTASFADLSLLFRSLELFFSSQNLDFASVRLSKEMEKDLLIALSKVYTEIQAWIRELEADSDEETIVSECLFEAA
HEDHNCLMRILDDLILLLTVDSQFIKHSVGKIIVTIFEFLDLSGSKSDAFIDSLFVCLSLILNRLLSCSVPPRSAGNSDFDSSVLAVSIKGLGRADWSTA
AHMIQILRNVLKNLKQEYDNHLQAYEKSVYSFLLNVPWDLVDNNCAEEPKVLFLGSLVPFVCSLVEQGTTPETKVHLQDQHSTISIVVNLVPKLLCWCVG
KRETIEQSTFHYFTHKLLMLMLRLSYVTHLSSTTLVSWLQLLHDYFEELLLKPISRGKPGQYNSLEGSPFLSSLLEEETKAMRSLHSQRQAILLFLRCCL
SLTSLTGETIYQCPSTDNSFSTIDCLSNLDSSTRMKGITELYIWIQHHLQSDFTFESETCMDDHILFAGSFLQLYMHEDDLLFQVLLQLVSASSCLEQQT
GVGKHMFHDIKNDIGYIVSNLFNPVKLFHLFLSELHYDHQVLLDYLISKDLGIKCAEYLLRCLRAICSSWHLFIEFSVEGKTTDELAWKKRKILSYGSTI
EEEESSVLTKDVPISREKLRVESAYSFNQHETIKHQYVKAKNCLLSLKFSIEHLQRKNLFPYNPKALLNRCVIVHASAFSLYCCYICPCFQPNNKRQTML
CLNSYCQTGNPTRILLHQLH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G50430 unknown protein Lus10022468
[exp]
0 1
AT2G46200 unknown protein Lus10000549
[exp]
2.0 0.9007
AT5G38730 Tetratricopeptide repeat (TPR)... Lus10032174
[exp]
3.0 0.8644
AT5G01110 Tetratricopeptide repeat (TPR)... Lus10022401
[exp]
5.9 0.8616
AT1G19485 Transducin/WD40 repeat-like su... Lus10018573
[exp]
7.3 0.8341
AT5G15270 RNA-binding KH domain-containi... Lus10030689
[exp]
7.5 0.8527
AT3G11440 MYB AtMYB65 myb domain protein 65 (.1) Lus10026787
[exp]
8.0 0.8373
AT5G43990 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-dom... Lus10024946
[exp]
10.4 0.8067
AT2G13680 GLS2, ATGSL02, ... ARABIDOPSIS THALIANA GLUCAN SY... Lus10002097
[exp]
10.9 0.8751
AT5G39350 Tetratricopeptide repeat (TPR)... Lus10013176
[exp]
11.2 0.8403
AT3G58590 Pentatricopeptide repeat (PPR)... Lus10020138
[exp]
11.7 0.7845

Lus10022468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.