Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50420 720 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 434 / 8e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 402 / 3e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 388 / 4e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 370 / 3e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G13230 372 / 1e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 372 / 6e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 371 / 7e-117 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 367 / 3e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 368 / 4e-116 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016773 [exp] 550 / 0 AT3G50420 283 / 8e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016772 [exp] 543 / 0 AT3G50420 256 / 7e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 415 / 1e-132 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 409 / 2e-130 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 398 / 4e-125 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 385 / 7e-124 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 378 / 3e-120 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 375 / 3e-119 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 372 / 1e-117 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131800 [exp] 864 / 0 AT3G50420 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 442 / 3e-143 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 422 / 3e-134 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 402 / 5e-129 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 398 / 7e-127 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 390 / 8e-124 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 385 / 7e-123 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 383 / 3e-121 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 374 / 6e-117 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 367 / 5e-116 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022469 pacid=23171705 polypeptide=Lus10022469 locus=Lus10022469.g ID=Lus10022469.BGIv1.0 annot-version=v1.0 ATGCCGCCATTGTCGACCCTGATACAGAACTGCACCATCGTCACTTCGCTTAAGAAAGCGCGTCAGCTACACGCTCTGATCTTAGCCACCACAACGTGTG CCAGCTATGCACTCTCGCCGTATGTAAACAACAACATTGTATCTATGTACGGCCGATGCGGTTCCCTTTCAGAAGCACATCAGGTGTTCGACCGAATGCC TGTGAGAACCACAGTGTCCTATAATGCGCTTATTGCAGCATATTCTAAAGAGCCCGGCCATGAGATCCGGTGCTTTCAGCTGTTTCATGATATGAGAGGT GAAGGGATGATGCCTAGTGGGTCAACTTTCGTGAGCTTACTGCAAGCTTGCTATGGGCTCGAGGATTGGGTTATCGGCTCCTTAATTCATGGTCAAGTAG TGAAATTTGGTGGGTTGGATAATGTTTCCCTCCAAACATCATTGTTGGGGATGTACTCGAATTGTGGGGATTTGAAGTCTGCCTGTCGAATATTTGAGGA GGTGGTAGTTAAAGACGCTGTCATGTGGACTGCCATGACATTTGGTCTCTTCAAGAATGAGGAGATACGAGCAGGGCTTCGCCTATTTAATGCGATGTTG AGATCTGATGTTACTCCTACTCAATTCACATACTCAACAGTGCTAAACGCTTGTGCTAAGTTGAGAGAGTACAGTGTTGGAAGGATGATTCACTCTCAAG TTATTGTTTTGGGTGTACCAGATGATTCGAAATTGCAAAACGCCTTGATTGACATGTATTCTAGCTGTGGAGACACAGGAACTGCTTTTGATTGCTTCAG CCGGATGGAGAAACCAGAACTGGTTTCATGGAATTCTATGATTTCCGGGTATGCAGAAAATGGTGAGTCAAGGGAGGCCATTGAATTGTTTGTAAAGATG TTGGGACCATCTCTTGCTAAACCAGATGGATACACGTTGGCAGCCGTTATGTCTGCAACTGGAGCATTACCTGCCAATTACTATGGAAAAGCTCTCCACA CCCTGGTAGTGAAAATGGGATTGGAGAAAGATGCCTTTGTGGGGACGACCTTGTTGTCAATGTATTTCAACAATGGTGACACTGCTTCAGCTCAAAAGGT TTTCTTTTTTATTGAAGAGAAGGATGTTGTTCTCTGGACCGAGATGCTTATGGGTCATTCGAGATTGGGCGATGGAGAGGCTGCAATGAAATTGTTCTGC GTGATGTGCAAGGACGGCATAAGGAGGGATAGCTTTGCTTTTAGTGGAGGTCTGAGTGCATGTGCTGATCTTGCAACTCTTAAGCAAGGAGAGATGGTCC ATTCCCAAGCCATAAAAACAGGATGTGATGCTGAATTGAATGTGTGCGGAAGTCTTGTCCATATGTATGCTAAAAACGGTAATTTTCAAGCTTGTCGGTC TGTGTTTTCGCAAGTTTCGCTCCCAGACTTGAAGTGTTGGAACTCGATGCTGGGTGGGTATGGTAACCATGGAATGCCAGGGGAGGCATTGAAATTATTC GAGGAGATGTTAAAACACGGTGTGATGCCGGATAATGTGACGTTTCTTACCCTCTTGTCTGCCTGCAGCCATGGTGGCTTGTTAGAGGAAGGAATGGTCG TGTGGAATTACATGAAGGAAAGTGGGATCGTCCCAGATCCTAACCATTATTCTTGCATGGCAAGTTTACTTAGTAGAGCTGGATTGTTGGAGAATGCTGA AGAGCTGATAGCTGAATCGCCTCATTCATTGGAGCATCTGGAGGTGTGGAGAACACTACTTGGCGCTTGCGTAAAAAAGAGGAACTTGTACTTGGGAATT CGAGCAGCAAAACAGATATTCAGATTAGATCCCGACGACAGTGCAACACACATCCTTGTATCAAATCTATATGCTGTGACCGGAACATGGAACGGTGTTG CAGATACGAGGAAGAAAATGAGAGGAATGATGCTGGAAAAAGATCCCGGGTTAAGCTGGATCGAAGTCAAGCATGAAATTCACTCCTTTGCTTCTGGTGA CCAATCAAAGGGTGGGATTGAAGACGCTAGATTAGAAGTGTGCAGATTGCAAGCTAACATGGCTAGATCTGAAACAGATGATCTTGATGAGAGGGCTTAT ATGCTGTCGTTTGCCTATTAG
AA sequence Show only first row Show all	>Lus10022469 pacid=23171705 polypeptide=Lus10022469 locus=Lus10022469.g ID=Lus10022469.BGIv1.0 annot-version=v1.0 MPPLSTLIQNCTIVTSLKKARQLHALILATTTCASYALSPYVNNNIVSMYGRCGSLSEAHQVFDRMPVRTTVSYNALIAAYSKEPGHEIRCFQLFHDMRG EGMMPSGSTFVSLLQACYGLEDWVIGSLIHGQVVKFGGLDNVSLQTSLLGMYSNCGDLKSACRIFEEVVVKDAVMWTAMTFGLFKNEEIRAGLRLFNAML RSDVTPTQFTYSTVLNACAKLREYSVGRMIHSQVIVLGVPDDSKLQNALIDMYSSCGDTGTAFDCFSRMEKPELVSWNSMISGYAENGESREAIELFVKM LGPSLAKPDGYTLAAVMSATGALPANYYGKALHTLVVKMGLEKDAFVGTTLLSMYFNNGDTASAQKVFFFIEEKDVVLWTEMLMGHSRLGDGEAAMKLFC VMCKDGIRRDSFAFSGGLSACADLATLKQGEMVHSQAIKTGCDAELNVCGSLVHMYAKNGNFQACRSVFSQVSLPDLKCWNSMLGGYGNHGMPGEALKLF EEMLKHGVMPDNVTFLTLLSACSHGGLLEEGMVVWNYMKESGIVPDPNHYSCMASLLSRAGLLENAEELIAESPHSLEHLEVWRTLLGACVKKRNLYLGI RAAKQIFRLDPDDSATHILVSNLYAVTGTWNGVADTRKKMRGMMLEKDPGLSWIEVKHEIHSFASGDQSKGGIEDARLEVCRLQANMARSETDDLDERAY MLSFAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10022469 [exp]	0	1
AT1G70350			unknown protein		Lus10029157 [exp]	6.0	0.8532
AT3G02080			Ribosomal protein S19e family ...		Lus10021865 [exp]	6.5	0.8761
AT2G34060			Peroxidase superfamily protein...		Lus10013955 [exp]	9.7	0.8424
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	12.6	0.8715
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10035597 [exp]	19.3	0.8333
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Lus10037263 [exp]	28.0	0.8285
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	29.2	0.8369
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	30.8	0.8464
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	34.9	0.8303
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	35.8	0.8377

Compare expression of checked genes

Lus10022469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.