Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37130 320 / 5e-105 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016774 [exp] 477 / 7e-167 AT4G37130 524 / 0.0 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036600 [exp] 348 / 3e-116 AT4G37130 424 / 4e-144 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022470 pacid=23171650 polypeptide=Lus10022470 locus=Lus10022470.g ID=Lus10022470.BGIv1.0 annot-version=v1.0 ATGGATACAATAATGCTTTTGGGTCATAGGGGGCGAATATTGGAGCACAGGGATGAGAGTCAGAGGCTGGATCAGTGTAGCCGTCTTTATGATTCTTCTG TTTTGAATGAAGGGTTCGAGCTTGATGCAAGCCATATTGTTCAGGAACTTGGCGGCATCAGTACTGCTATGGAAAGACAAAAAGCAGTTCTACAAGAGCA CATGGTCAACGTTAAAGACATGTTGAGGAATACAGAGATGGCTGTTCGTTCTTTCAGGATGCTTCGTCCACGATTCCTCCATTCTGCTACAGGCGGTTCT TCAAATGTTACTGCACCATCTCAGCCTTCTGGAGGAACAGGCGCACCAAGTTCTACTAGCCAGCCACTGTCTACTGCCATAGCACCAGTATTTGATTTTT ACAGTGGGCTTCCGAAAAAACCATCACCATTCCTAAATCAAACAGTTCTCAGATTTGAGAAGTACTTGGGTGAATGTCGACAGTGGATTGAAGAGTTAGA GCAACTGCTCCTTTTAGATTCCTACAGGAATTCTTCCCAGTCTGGATCCTCTTTATTACAGTCTCTCCCTATAGTCATGTCAAATGTGCACGACTTTTTC GTTCATACAGCTGCAAAGGTTGAGAGCATACATCAGTACATTGAATCTATGAGGGCAGCATACCTTGTTGACCAGCGACGTCGAGGTGAAGGGAATGATC CATTTCTTGAGGCTGATCGTCGTGAATCTGCAAGGCAAGAGGCTGCAGCTAAGCGAGTCCACCCAACATCACATTTGCCTGCGAATTCTCAGCTTCCAAC ACAGGTTGCTGGGTTGCTCCCGAGCACAGTTGCACCTGCTGCATCAACTGCTCCCCAGACAGCGACGACAGCACCTGGAGCAGCATCTTCAGGGTCTGGG TTATCTCTTTTTGGTACTCCAGCTTCTGCACCATCATCATCTATGGCAGGAACTTCTTTGTTCACTACTCCAGCAACATCTGCTCCCACATCTTCTTTGT TCGGGCCGTCTGGTGCTTCTCCACAACATTCATTGTTTGGTCCTGCTTCCACTCCATCATTGTTTTCTAATACTGCTTCAGCTTTAACCTCCACCACCCC TGCTGCTGGTACCCTATTTTCAACACCATTTCCTTCAGGTGCTGCAACGGGGTCTGGAGCTAGCTTCAGCAGTGTGTCTAGGTCAGCTAAGCCAAAATCT CGAACTGGCAGACGTTAG
AA sequence Show only first row Show all	>Lus10022470 pacid=23171650 polypeptide=Lus10022470 locus=Lus10022470.g ID=Lus10022470.BGIv1.0 annot-version=v1.0 MDTIMLLGHRGRILEHRDESQRLDQCSRLYDSSVLNEGFELDASHIVQELGGISTAMERQKAVLQEHMVNVKDMLRNTEMAVRSFRMLRPRFLHSATGGS SNVTAPSQPSGGTGAPSSTSQPLSTAIAPVFDFYSGLPKKPSPFLNQTVLRFEKYLGECRQWIEELEQLLLLDSYRNSSQSGSSLLQSLPIVMSNVHDFF VHTAAKVESIHQYIESMRAAYLVDQRRRGEGNDPFLEADRRESARQEAAAKRVHPTSHLPANSQLPTQVAGLLPSTVAPAASTAPQTATTAPGAASSGSG LSLFGTPASAPSSSMAGTSLFTTPATSAPTSSLFGPSGASPQHSLFGPASTPSLFSNTASALTSTTPAAGTLFSTPFPSGAATGSGASFSSVSRSAKPKS RTGRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37130			hydroxyproline-rich glycoprote...		Lus10022470 [exp]	0	1
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	2.8	0.9413
					Lus10032947 [exp]	3.0	0.9289
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	4.7	0.9398
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	6.5	0.9296
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	6.7	0.9369
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10013522 [exp]	8.9	0.9342
AT4G40030			Histone superfamily protein (....		Lus10013946 [exp]	15.3	0.9225
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10010809 [exp]	15.9	0.9257
AT5G07380			unknown protein		Lus10032518 [exp]	17.9	0.8997
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	17.9	0.9295

Compare expression of checked genes

Lus10022470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.