Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23520 1163 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 1138 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 1033 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 301 / 2e-91 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 218 / 5e-61 unknown protein AT1G16540 72 / 1e-12 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016776 [exp] 1733 / 0 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 1320 / 0 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 1271 / 0 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 275 / 2e-81 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 272 / 5e-80 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 250 / 2e-71 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 221 / 4e-61 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 81 / 6e-16 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016752 [exp] 81 / 7e-16 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036100 [exp] 1436 / 0 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 1406 / 0 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 298 / 1e-89 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 276 / 3e-81 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 275 / 9e-81 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 84 / 4e-17 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 81 / 4e-16 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 81 / 2e-15 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.003G172100 [exp] 76 / 2e-14 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056400 [exp] 54 / 5e-08 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022472 pacid=23171707 polypeptide=Lus10022472 locus=Lus10022472.g ID=Lus10022472.BGIv1.0 annot-version=v1.0 ATGCATCTGTCACTTTGGAAGCCCATTTCTCACTGCGCTGCTCTAATTCTGGACAAGAAGAGCAGGAGGAGAGATGGGTCCGAATCCGATGTCGAAGTCA AAAGGAATCCTTCAGTTCTCCGGAAACTTCAAGAACACAAGCTCAGAGAGGCCCTGGAGGAAGCTTCCGAGGATGGCTCGCTCTTCAAATCCAAGGACAT GGATTCCGACTCAGCTTCTAACCTAGACGAAACTCTTGGCCGATCGAGATCCTTGGCAAGGCTTCACGCCCAACGAGAGTTCCTTCGAGCTACGTCTCAT GCTGCTGATCGTGTATTCCAGACTCCTGATTCTATCCCTGACCTCCATGAATCCTTCTCCAAGTTCCTCACTATGTACCCTAAGTATGAGTCTTCCGACA AGGTTGATGAGTTGAGGTCAGATGAATATGGTCATCTGTCTCCTAAGGTATGTCTTGATTACTGTGGATTTGGCCTCTTCTCCTACCTCCAGACTTTGCA TTACTGGGGATCTTCCACCTTTAGCTTGTCCGAGATCACTGCAAATTTGAGCAATCATGCTCTTTATGGTGGTGCCAAAAAAGGCACCGTTGAGCATGAT ATCAAGACCAGGATAATGGATTATTTGAACATCCCTGAGAACGAGTATGGTCTTGTTTTCACTGTTAGTAGAGGTTCTGCTTTTAAATTGCTTGCAGAAT CATACCCTTTTCATACCAACAAGAAGTTGTTGACTATGTTTGATTACGAGAGTCAGTCTGTGAATTGGATGGCTCAGTGTGCCAAGGACAAGGGTGCAAA AGTTCATAGTGCTTGGTTCAAATGGCCAACTCTTAAACCCTGTTCAACTGATTTGAGGAAGCAAATTTCAAACAAGAAAAAGCGTAAAAAGGATGCTGCC ACTGGTTTGTTTGTGTTCCCTGTACAGTCGAGGGTTACTGGAGCTAAATATTCATACCAGTGGATGGCACTTGCCCAACAGAACAATTGGCATGTGTTGC TTGATGCTGGCTCATTAGGTCCAAAAGATATGGATTCACTTGGTTTATCATTGTTTCGCCCTGATTTCATTATAACCTCCTTTTACAGGGTGTTTGGGTA TGATCCTACTGGCTTTGGATGTCTTGTTATTAAGAAGTCTGTTATGTCAAGTCTTCAGCATCGTTCTGGAAGTACAGGGTCTGGCATTGTGAAGATAACG CCCGAGTATCCTCTGTATTTGAGTGATTCTGTAGATGGTCTGGATGGATTGGGTGGGGTTGAAGATGATGATGAAATTATTGGGAATGACGAAAAAACTA GTGAAACACATCCAGGAACCCAGTTGCCTGCATTCTCTGGGGCATTTACATCTGCTCAAGTGAGGGATGTATTTGAGACTGAGATGGAGCATGACAACAA TTCAGATAGAGATGGAACAAGCACTATATTTGAAGAAGTGGAGAGCATCTCAATTGGAGAAGTGATGAAAAGCCCTGTCTTCAGTGAAGATGGATCATCC GACAATTCCTTTTGGATTGATTTGGGTCAGAGTCCTTTGGGGTCTGATTCTGCAGCCCAATTGACAAAACAGAAACCCGCCTCTCCGCTGCCTCCTTTCT GGTTCACCAGCAAGAAGAACCACAAGAAGCAAACGTCAAAGATCTACGGCAGTCCACTGTATGATGACAAGGGAGTGAACTTACATGATGAGAATCAGGC ATTGTCATTTGATGCGGCAGTTTTATCAGTTTCTCAGGAACTGGACTGGGTTAAGGAGGTTCCTGATGAAGAGGAGCAGTATGCTCAGTCAAACCTACGC AATGGTCTGAATCATATGCATGTTTCTGAAATTGAAGAAGAACCAGTAAATGGATTTCCATCCAGCTCCCGTATCCACATTTCAAATTCTGCGCAACATC ATTGCCTTGAAAATGGTTCAGATAAAAAGGAGAATGCTATAAGAAGAGAAACGGAAGGTGAATTTCGGTTGTTGGGGAGAAGGGAAGGGAACAGATATGG TGGTGGTGGTGGTGGTGGTGGTAGATTCTTTGGCGTTGATGAGAATGAACATCCAAACAAGGGAAGAAGGGTATCATTTAGCATGGAGGAGAGTTGCAAA GAACATATTAACCACACATTCGAGCCAGGGGAAGTATCTTTAGCCACATTGGATGATGATGAATACACCAGCGACGGTGAATTTGGTGATGGTCAAGATT GGGACAGGAGAGAACCTGAGATAACTCTTCGTCATTTAGACCATGTCAATATGTTGGGTCTCAATAAAACGACTCTTAGGCTGAGGTATTTAATCAACTG GCTAGTAACCTCGTTGCTGCAACTAAGATTATCCAATTCCAATGCTGAAGGAGAAGGAGGAGGAGTGCATCTGGTTCACATATATGGACCGAAAATAAAG TACGAGAGAGGTGCTGCTGTAGCTTTCAACGTTCGAGACAGAAACCAGGGGCTTGTGAATCCTGAAATTGTTCAGAGGCTAGCTGAAAAGGAAGGTATAT CTCTTGGGATCGGCTTCCTCAGTCACATACGAATTGTGGATAGCCCAAGACAACACAAGGGTGGTTTGAACCCTGAAGAGACCAGCCTTTGCATGCCAAT GGATAATGGGCAGTTGAATGGAAAAACTGGCTTCATAAGAGTGGAGGTTGTCACAGCTTCATTGGGATTTCTTACAAACTTTGAAGATGTGTACAAGTTG TGGGCTTTTGTTTCCAAGTTTCTTAATCCCACTTTTACAAGGGAAGGTAGCCTTCCTACTGTTGAAGAAGAAGAAGGCGAAGAAACGTGA
AA sequence Show only first row Show all	>Lus10022472 pacid=23171707 polypeptide=Lus10022472 locus=Lus10022472.g ID=Lus10022472.BGIv1.0 annot-version=v1.0 MHLSLWKPISHCAALILDKKSRRRDGSESDVEVKRNPSVLRKLQEHKLREALEEASEDGSLFKSKDMDSDSASNLDETLGRSRSLARLHAQREFLRATSH AADRVFQTPDSIPDLHESFSKFLTMYPKYESSDKVDELRSDEYGHLSPKVCLDYCGFGLFSYLQTLHYWGSSTFSLSEITANLSNHALYGGAKKGTVEHD IKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQCAKDKGAKVHSAWFKWPTLKPCSTDLRKQISNKKKRKKDAA TGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGYDPTGFGCLVIKKSVMSSLQHRSGSTGSGIVKIT PEYPLYLSDSVDGLDGLGGVEDDDEIIGNDEKTSETHPGTQLPAFSGAFTSAQVRDVFETEMEHDNNSDRDGTSTIFEEVESISIGEVMKSPVFSEDGSS DNSFWIDLGQSPLGSDSAAQLTKQKPASPLPPFWFTSKKNHKKQTSKIYGSPLYDDKGVNLHDENQALSFDAAVLSVSQELDWVKEVPDEEEQYAQSNLR NGLNHMHVSEIEEEPVNGFPSSSRIHISNSAQHHCLENGSDKKENAIRRETEGEFRLLGRREGNRYGGGGGGGGRFFGVDENEHPNKGRRVSFSMEESCK EHINHTFEPGEVSLATLDDDEYTSDGEFGDGQDWDRREPEITLRHLDHVNMLGLNKTTLRLRYLINWLVTSLLQLRLSNSNAEGEGGGVHLVHIYGPKIK YERGAAVAFNVRDRNQGLVNPEIVQRLAEKEGISLGIGFLSHIRIVDSPRQHKGGLNPEETSLCMPMDNGQLNGKTGFIRVEVVTASLGFLTNFEDVYKL WAFVSKFLNPTFTREGSLPTVEEEEGEET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022472 [exp]	0	1
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016776 [exp]	1.0	0.8549
AT1G48840			Plant protein of unknown funct...		Lus10026581 [exp]	5.1	0.8037
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	11.9	0.7833
AT4G32350			Regulator of Vps4 activity in ...		Lus10034905 [exp]	20.7	0.7775
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	36.6	0.7733
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10015013 [exp]	38.8	0.7356
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	38.8	0.7562
AT5G36930			Disease resistance protein (TI...		Lus10004257 [exp]	41.2	0.7732
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	41.5	0.7715
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	43.0	0.7612

Compare expression of checked genes

Lus10022472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.