Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 78 / 5e-16 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 65 / 2e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 64 / 4e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 63 / 2e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 55 / 2e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 52 / 1e-07 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 52 / 1e-07 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31690 52 / 3e-07 B3 REM9 Transcriptional factor B3 family protein (.1) AT5G66980 48 / 3e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 44 / 7e-05 B3 REM5 transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016777 [exp] 441 / 4e-156 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 137 / 8e-38 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 125 / 4e-33 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 110 / 5e-28 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 79 / 3e-16 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015266 [exp] 75 / 2e-14 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10039303 [exp] 73 / 5e-14 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 73 / 6e-14 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025534 [exp] 71 / 6e-14 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 75 / 1e-14 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 73 / 4e-14 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 68 / 2e-12 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 67 / 3e-12 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 61 / 3e-10 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 59 / 3e-10 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 59 / 8e-10 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 54 / 7e-08 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 50 / 2e-06 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 47 / 8e-06 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10022473 pacid=23171659 polypeptide=Lus10022473 locus=Lus10022473.g ID=Lus10022473.BGIv1.0 annot-version=v1.0 ATGAATATTAGGAACGAGCATATGATATCTCATACCAAACGGATTCGCCAAGATGATTGCGACGAAAGAATAATCAGAACCCGCTTCTTCAAAATCATTC TTGACGACACTATTCGACACAAGAAGCTTGTCCCAAGTGGAGTGAAGTGGGTGGTGAGTGTAGCGAGGGATGAACTTGGAGTGAGGTTCAGCAATGGATG GCATGAATTTGCTGAATCTCACTCATTGAAACATGGCCATTTTTTTGTTTTCGAGTATGAGGGTTCTTCTAGTTTTTTCGTTGTTATCTGCGATAAAACT GCTACTAAAATTGCGTATCCAAAGAAGCAGCAACAGCCTGATGAAGAGGGTGACAAACTATTTCCTCAACCAAAACTCCAACAATGTGAAAAAGAAGAAG AAGTAGAAGCGTTTGATCATCGAGATGATGATGATGTAGCACCAGTTAACAAGGATGGGGAATTGCATCTTTCAAATTCCACAAAGTCTTCCTTAGTCGT CAGGGAGATGAGGCCTTGTAGATGGGGAATTGCAACTTTCAAATTCCACAAAGTCCTCCTCAGTCGTCAGGGAGATGAGGCCTTGTGGGATGATAAGAAA GAGGGTGGTGCAGATGATAAAAGAAGGATATATGATGATCATAGACCACATGCGCCTATAACTGAATTCTCATCACAACATCCATTTTTCTCCATCGAAA TGACTTCCAAAATGCTCGCAAAGAAGGACCTGCATGTACCCGTAAGCTTTTCGACTAACCATATTGGGAAAGATGACAAGTCAGTGAAGTTCCAGGTTTC TGATAAACCATGGTCTGTGGCGCTAATGAGATATATATACTCCAAGTATGTATGCTTCACCGATGACTGGAATCTATTTACCAAAGAAAACTCGCTAAAT TCAGGAGACGTTTGTTTCTTTGAGTCTGTCCAAAGGACGTTGCTTAATGTCACCATCTTTAGGGGATGTGCATTACCTGCTGGATGTTAA
AA sequence Show only first row Show all	>Lus10022473 pacid=23171659 polypeptide=Lus10022473 locus=Lus10022473.g ID=Lus10022473.BGIv1.0 annot-version=v1.0 MNIRNEHMISHTKRIRQDDCDERIIRTRFFKIILDDTIRHKKLVPSGVKWVVSVARDELGVRFSNGWHEFAESHSLKHGHFFVFEYEGSSSFFVVICDKT ATKIAYPKKQQQPDEEGDKLFPQPKLQQCEKEEEVEAFDHRDDDDVAPVNKDGELHLSNSTKSSLVVREMRPCRWGIATFKFHKVLLSRQGDEALWDDKK EGGADDKRRIYDDHRPHAPITEFSSQHPFFSIEMTSKMLAKKDLHVPVSFSTNHIGKDDKSVKFQVSDKPWSVALMRYIYSKYVCFTDDWNLFTKENSLN SGDVCFFESVQRTLLNVTIFRGCALPAGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	2.4	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	3.5	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	4.2	1.0000
					Lus10011636 [exp]	4.9	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	5.5	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	6.0	1.0000
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	6.3	1.0000
					Lus10038594 [exp]	6.5	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	7.0	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	7.5	1.0000

Compare expression of checked genes

Lus10022473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.