Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23470 557 / 0 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) AT5G49820 130 / 1e-32 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT2G31190 120 / 2e-29 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT1G13770 111 / 2e-26 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 110 / 2e-25 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 101 / 9e-23 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016778 [exp] 999 / 0 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 145 / 1e-37 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 145 / 1e-37 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 120 / 2e-29 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 117 / 2e-28 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10001047 [exp] 119 / 3e-28 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 117 / 1e-27 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 106 / 2e-24 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 81 / 4e-16 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035300 [exp] 675 / 0 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 132 / 2e-33 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 115 / 9e-28 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 114 / 8e-27 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 106 / 1e-24 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.006G099700 [exp] 79 / 2e-15 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 69 / 9e-13 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10022474 pacid=23171722 polypeptide=Lus10022474 locus=Lus10022474.g ID=Lus10022474.BGIv1.0 annot-version=v1.0 ATGCAATCGGCGTTATTCTCTTCTGTCAGTTCACGTCAGCTCTGCTTTCCATGGAGATCCGATGAGTTATACCAGAAACCTTTTCCTCCCAAAAGCTTGA CTTTGACCAGCTCTTTAAGGACCTCAATTAACTATGGACCTGAAGAAGGTATCGGCAAGGGTCCTTCTTCCGAACAGGAATCAAAAACCGGAGCTGTTTA TCCGTCTAAGCTCCCAGTGGGGGTCAGGAAATCGGGTGGGGTGTCCAGGTACATATGGGATGGGAGTTGTTTGAGCTTAGAAAGTGTAGATGGCGGCAAG GCGGCGGCTTACAGTTTTGATTTTGAAGATGGGTTTCAGACACTGTTTCGGGGCTGTAGTTTAGCGGTAAAAGATGTGTTTGTTCCCAAACGAGTCCCTG ATAATTACATGCAGTATGTGAAATGGAAACTGTTGCACCGGGTTTTCAGCTCTGCTTTACAGGTCCTCGCCACTCAGGCCATGTTTCGGGCTATTGGCAT CGGGTTTTCTCGATCACTTCCATCAGCAGCTGCTTTCAATTGGGTCTTGAAAGACGGACTCGGTCGCCTCTGTAGGTGCATCTACACTGCCAGCCTGGCT TCTGCATTTGATACAAATTTGAAGAGGGTTAGGTTCTTGACGTCTGTTGTGTTCAGTCTAAGCATTGGAGTGGAGCTGCTGACCCCTGTATTTCCCCACT ACTTCCTGCTTCTCGCCACTTTAGCTAACATCGCCAAACAAATTAGCTTGGCATGTTACTTAGCCACCAGTTCTGCTGTTCATCGAAGTTTTGCTGTTGC AGATAACCTTGGCGAAATCTCTGCAAAAGCACAGATACAGTCAGTGTGCTTTGACAATCTTGGACTCCTGTTTGCTGCAACCTTGAACATATTGTTCAAG AACAATCAAAAGTTGCTTACAAGTCTACCATTTATAGTCTACCCAATTTTCGCAGCTATTGATGTTTTCGGGATATATCAAGGGCTTAAGCATGTCCATT TACAGACATTGACTAAGGATAGACTTGAAATTATACTGGACACATGGATTGAAGTAGGAAATGTGCCATCACCTGCCCAAGTGAGTAAGAAGGAAGGGGT GGGTATCTTCGGGAGCACAAGGAAGAAGTCATGGCCCATCAGGATTGGTTGTTTAACTGTTGATCAGCATGTACCAAAATTGTCAATGATGGTAATGCAG TCTTTAGGCAGTGAGGACTATTACTTCATATGTATGGAGAACGCCGGTGGAGGATTTCTACAAACCAAACAACCTGGCATTGTACTTTGCTTCCGTGAAG GGGCTGGCACTAGCGATGTTACAATGGGTTTGTTGCAGGCATGCTACATCCGTAAAGCCCTTGCGGACAGCAATCCTTCAGATTTGGTTGTGATGCAGTG GCATAAGCTGTTGGAGGATACCAAGATCTCAGCAGTGAAGAATTTGAACCTGGTAAATGATCAAATGGCAGAACTTGGGTGGGGCCTCAAGAACATATTA CTCGGTTCAGGGGAGCAGGCTAGGTACAGTTTCATAGATGATTGA
AA sequence Show only first row Show all	>Lus10022474 pacid=23171722 polypeptide=Lus10022474 locus=Lus10022474.g ID=Lus10022474.BGIv1.0 annot-version=v1.0 MQSALFSSVSSRQLCFPWRSDELYQKPFPPKSLTLTSSLRTSINYGPEEGIGKGPSSEQESKTGAVYPSKLPVGVRKSGGVSRYIWDGSCLSLESVDGGK AAAYSFDFEDGFQTLFRGCSLAVKDVFVPKRVPDNYMQYVKWKLLHRVFSSALQVLATQAMFRAIGIGFSRSLPSAAAFNWVLKDGLGRLCRCIYTASLA SAFDTNLKRVRFLTSVVFSLSIGVELLTPVFPHYFLLLATLANIAKQISLACYLATSSAVHRSFAVADNLGEISAKAQIQSVCFDNLGLLFAATLNILFK NNQKLLTSLPFIVYPIFAAIDVFGIYQGLKHVHLQTLTKDRLEIILDTWIEVGNVPSPAQVSKKEGVGIFGSTRKKSWPIRIGCLTVDQHVPKLSMMVMQ SLGSEDYYFICMENAGGGFLQTKQPGIVLCFREGAGTSDVTMGLLQACYIRKALADSNPSDLVVMQWHKLLEDTKISAVKNLNLVNDQMAELGWGLKNIL LGSGEQARYSFIDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	0	1
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	5.6	0.7084
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	5.8	0.6796
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	11.8	0.6534
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	13.7	0.6631
AT1G68185			Ubiquitin-like superfamily pro...		Lus10000234 [exp]	15.9	0.6117
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10026618 [exp]	17.9	0.6170
					Lus10021794 [exp]	18.0	0.6225
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	24.0	0.6400
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	25.2	0.6322
AT4G27020			unknown protein		Lus10040054 [exp]	26.5	0.5971

Compare expression of checked genes

Lus10022474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.