Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50390 536 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 475 / 4e-166 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 468 / 6e-163 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 457 / 6e-159 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 449 / 8e-156 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 423 / 2e-147 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 267 / 1e-85 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 249 / 2e-78 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 244 / 9e-77 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 231 / 2e-71 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016779 [exp] 735 / 0 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 509 / 3e-180 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 501 / 1e-176 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 487 / 3e-171 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 408 / 2e-140 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 403 / 2e-137 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 399 / 2e-136 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 384 / 1e-129 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 247 / 1e-77 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131100 [exp] 607 / 0 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 592 / 0 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 516 / 0 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 507 / 1e-178 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 507 / 1e-178 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 501 / 8e-177 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 258 / 3e-82 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 254 / 2e-79 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 248 / 2e-78 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 239 / 1e-74 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10022475 pacid=23171640 polypeptide=Lus10022475 locus=Lus10022475.g ID=Lus10022475.BGIv1.0 annot-version=v1.0 ATGGATTACTCACCGCCAGCTAATGATTTGTCCAACGTTCCATCTCCATTGACCAACTCACCGTGGTCCTCTCATATGAATCTCAATGTTCTTCCAGATG AAGGTCATGATAATGACGATCAGTTTTGCCCCAATGTGTTGTTGGGTTCGTTGGTCCGTGAAGAAGGCCACATTTATTCGTTAGCAGCGTCTGGAGACCT TCTCTACACCGGCTCTGACAGCAAGAATATCCGGGTTTGGAAGAACCACCGAGAGTTTTCTGGGTTCAAATCAAACAGTGGGTTGGTGAAGGCGATAATC ATATACGGGGACAAGATCTTCACAGGTCATCAGGATGGCAAAGTTCGGGTGTGGAAAGTTTCTTCCAAGAACCCTACTGTTCATAAACGGGTTGGTACTT TACCAACTCTGAAAGACGTAGTGAAAAACTCAATCAAACCCAGCAATTACATCAACGAAGCGAGGCGGAACAAGAATTTCCTTTGGTTGAAGCATTTTGA TGCGATTTCATGCCTCGGGATTAGCGAGGACGGTTCCTACCTTTACTCTGCATCGTGGGACAAGACGTTCAAAGTGTGGAGGATCTCAGATTTCAAATGT CTGGAATCAATCGTTGCCCACGACGATGCAGTCAATGCCCTCATTGCAGGATTCGACGGGTTGGTGTTTACCGGTTCAGCAGACGGCAGCGTGAAGGTAT GGCGGAGGGAATTACAAGGGAAAGGAACAAAGCATTTCTTTTCACAGACGTTGCTTAAGCAAGAGTGTGCAGTAACGGCCCTAGCAGCGAACCCGCCGGA TGCGACGATCGTGTACTGCGGATCTTCCGACGGACTTGTCAATTTCTGGGAGAGGGATACGCAATTGTCCCACGGTGGTGTTCTGAGAGGGCATAAATTG GCTGTGCTGTGTTTGGTCGTTGCTGGAAGCCTTGTGTTCAGCGGGTCTGCTGATATGGGGATTTGTGTATGGAGGAGGAATGGAATGGAGCATGTTTGTT TGTCGCAGTTAGCTGGTCATACGGGGCCGGTGAAGTGTTTGGCGGTGGAGGAGGATCAGATGCCTGCCACAACAATGGCGGGTGGTGGGAGGGCCTGGAC TTTGTATAGCGGGAGTCTTGATAAGTCTGTGAAAATGTGGAGAGTATCGGAGCAAGCACCACCAATAGGGTGGAATAATGTGGCTTCAACTACTGGAAAT ACTAAACCATCAGCATCAGTATTAACAATGGCTCCCACTTTCTCTTCTCAAGGAAACAGGATTAGTGAAGCAAAACATTGA
AA sequence Show only first row Show all	>Lus10022475 pacid=23171640 polypeptide=Lus10022475 locus=Lus10022475.g ID=Lus10022475.BGIv1.0 annot-version=v1.0 MDYSPPANDLSNVPSPLTNSPWSSHMNLNVLPDEGHDNDDQFCPNVLLGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNHREFSGFKSNSGLVKAII IYGDKIFTGHQDGKVRVWKVSSKNPTVHKRVGTLPTLKDVVKNSIKPSNYINEARRNKNFLWLKHFDAISCLGISEDGSYLYSASWDKTFKVWRISDFKC LESIVAHDDAVNALIAGFDGLVFTGSADGSVKVWRRELQGKGTKHFFSQTLLKQECAVTALAANPPDATIVYCGSSDGLVNFWERDTQLSHGGVLRGHKL AVLCLVVAGSLVFSGSADMGICVWRRNGMEHVCLSQLAGHTGPVKCLAVEEDQMPATTMAGGGRAWTLYSGSLDKSVKMWRVSEQAPPIGWNNVASTTGN TKPSASVLTMAPTFSSQGNRISEAKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50390			Transducin/WD40 repeat-like su...		Lus10022475 [exp]	0	1
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	4.5	0.7792
AT3G56820			unknown protein		Lus10012105 [exp]	11.7	0.8026
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10030238 [exp]	29.9	0.7056
AT3G24630			unknown protein		Lus10043221 [exp]	31.5	0.7618
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10037464 [exp]	32.5	0.7378
AT5G41620			unknown protein		Lus10028746 [exp]	33.2	0.7144
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	33.5	0.7613
AT5G47530			Auxin-responsive family protei...		Lus10001734 [exp]	39.2	0.7192
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Lus10023228 [exp]	46.3	0.7442
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	63.5	0.7170

Compare expression of checked genes

Lus10022475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.