Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37200 294 / 6e-101 HCF164 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) AT1G43560 57 / 4e-10 ATY2 thioredoxin Y2 (.1) AT1G76760 56 / 1e-09 ATY1, TRX-Y1 thioredoxin Y1 (.1) AT1G50320 56 / 1e-09 ATHX, ATX thioredoxin X (.1) AT3G15360 52 / 3e-08 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT2G15570 52 / 6e-08 TRX-M3, GAT1, ATHM3, ATM3 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) AT5G06430 52 / 7e-08 Thioredoxin superfamily protein (.1) AT2G47470 52 / 2e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G19730 48 / 3e-07 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G21750 51 / 4e-07 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016780 [exp] 445 / 2e-160 AT4G37200 300 / 4e-103 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) Lus10036337 [exp] 58 / 2e-09 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 57 / 2e-09 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10018875 [exp] 56 / 2e-09 AT1G76760 176 / 6e-57 thioredoxin Y1 (.1) Lus10014798 [exp] 56 / 2e-09 AT3G15360 181 / 2e-58 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10028569 [exp] 56 / 3e-09 AT1G76760 174 / 3e-56 thioredoxin Y1 (.1) Lus10040887 [exp] 55 / 3e-09 AT3G15360 182 / 4e-59 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10029755 [exp] 52 / 3e-08 AT3G15360 162 / 3e-51 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10042784 [exp] 52 / 4e-08 AT3G15360 165 / 4e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034400 [exp] 316 / 2e-109 AT4G37200 305 / 5e-105 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) Potri.013G132200 [exp] 57 / 7e-10 AT4G03520 173 / 4e-55 Thioredoxin superfamily protein (.1.2) Potri.002G073000 [exp] 57 / 1e-09 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.011G120700 [exp] 56 / 3e-09 AT3G15360 190 / 1e-61 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.007G074000 [exp] 55 / 4e-09 AT1G50320 201 / 3e-66 thioredoxin X (.1) Potri.014G035300 [exp] 55 / 4e-09 AT5G06430 251 / 1e-85 Thioredoxin superfamily protein (.1) Potri.005G193400 [exp] 54 / 6e-09 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1) Potri.005G186800 [exp] 54 / 7e-09 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2) Potri.002G066800 [exp] 54 / 1e-08 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1) Potri.009G100700 [exp] 53 / 2e-08 AT2G15570 193 / 2e-63 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10022477 pacid=23171677 polypeptide=Lus10022477 locus=Lus10022477.g ID=Lus10022477.BGIv1.0 annot-version=v1.0 ATGGCTAATGTGGCTACCAGCACCATCCACACAGTTCGGCCACATTTTCTCTACACCGGCAAATCCCGATCGCAGCCGCCGGCGAAAGTCATCTACCATC ACCTAGGAAAATCCCGGAAGTCTTTCCCGGTCACAGCTTGCGAAACCAAATCCAACGGATCCACCGAGAGTGAGGAAAAAGAGGCTGCAGAGGCCTCTCC TTCCTCTTCCGAATCTTCTGGATTACCTGAATTTCCGACTAGGAATCTGAATAGGCGGATAGCAGTGGGTTCAGGAGTGGTGGGCGTTGGTCTCTTCTTG TCCCGTCGGCTAGATTTTGGTGTTTCCCTTAATGATTTATCGGCCGCTGCATTGCCTTACGAAGAGGCTCTCACAAACGGGAAGCCAACGGTTGTGGAAT TCTACGCAGATTGGTGCGAAGTTTGCCGAGAGTTAGCCCCAGACGTGTACAAAGTTGAGCAGCAGTATAAGGACCGGGTGAATTTTGTGATGCTGAATGT TGACAACACTAAATGGGAACAAGAGCTTGATGAGTTTGGGGTTGAGGGGATCCCACATTTTGCATTCCTGGATAGAGATGGGAATGAAGAGGGTAATGTT GTCGGGAAGCTGCCAAGGCGGTATCTCATGGAGAACGTTGAGGCACTTGCTAGTGGGGAGGTAACTGTGCCTCATGCTCGCATGGTTGGGCAGTATTCAA GAGCCGAAGCTAGAAAAGTCCGTCCAGTTGTTGATCCTAGAAGCCATGGTTGA
AA sequence Show only first row Show all	>Lus10022477 pacid=23171677 polypeptide=Lus10022477 locus=Lus10022477.g ID=Lus10022477.BGIv1.0 annot-version=v1.0 MANVATSTIHTVRPHFLYTGKSRSQPPAKVIYHHLGKSRKSFPVTACETKSNGSTESEEKEAAEASPSSSESSGLPEFPTRNLNRRIAVGSGVVGVGLFL SRRLDFGVSLNDLSAAALPYEEALTNGKPTVVEFYADWCEVCRELAPDVYKVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRDGNEEGNV VGKLPRRYLMENVEALASGEVTVPHARMVGQYSRAEARKVRPVVDPRSHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	0	1
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	3.3	0.9377
AT4G28660		PSB28	photosystem II reaction center...		Lus10022867 [exp]	3.5	0.9366
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	4.5	0.9342
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	4.6	0.9282
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	5.3	0.9362
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	6.9	0.9334
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	7.1	0.9369
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	10.0	0.9250
AT3G54890		LHCA1	photosystem I light harvesting...		Lus10040391 [exp]	10.2	0.9217
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	10.4	0.9224

Compare expression of checked genes

Lus10022477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.