Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50820 530 / 0 OEC33, PSBO2, PSBO-2 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1) AT5G66570 518 / 0 MSP-1, PSBO1, OEE33, OEE1, OE33, PSBO-1 OXYGEN EVOLVING ENHANCER PROTEIN 33, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, MANGANESE-STABILIZING PROTEIN 1, PS II oxygen-evolving complex 1 (.1) AT4G37230 140 / 3e-41 Photosystem II manganese-stabilising protein (PsbO) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016783 [exp] 642 / 0 AT3G50820 535 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130400 [exp] 551 / 0 AT3G50820 547 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1) Potri.007G033700 [exp] 550 / 0 AT3G50820 537 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01716 [flax] [poplar] MSP Manganese-stabilising protein / photosystem II polypeptide
Representative CDS sequence Show only first row Show all	>Lus10022479 pacid=23171676 polypeptide=Lus10022479 locus=Lus10022479.g ID=Lus10022479.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCCTTCAGGCAGCAGCCACACTTATGCAACCCACCAAGGTGGGAACTTTTTCGTCATCCAGGAGCTCCTCCAATGCCCAGCTGAAGCCTT CTGCTAGAGTCACCTGCTCTCTCCATTCTAACTTCAACGAATTGGCCCAAAAATGTTTCGATGCCACCAAGCTTGCTGGTTTTGCTCTTGCAACTTCTGC TCTTGTAGCTTCGGGTGCTGGAGCGGAAGGACCACCGAAAAGGCTAACCTTCGACGAGATCCAGAGCAAAACCTACATGGAAGTGAAGGGAACTGGAACC GCCAACCAATGCCCAACCATCGATGGCGGATCCGAGTCGTTCGCTTTCAAAGCTGGCAAATACCAAGCCAAGAAATTCTGCTTCGAGCCAACTTCCTTCA CCGTGAAAGCCGAAGGAATCGCCAAGAACTCCGCCCCTGAATTCCAGAACACCAAGCTCATGACCCGGCTCACCTACACCCTCGACGAAATCGAAGGGCC ATTCGAGGTAGCCTCTGACGGCACAGTGAAATTCGAGGAGAAGGACGGAATCGACTACGCGGCTGTCACGGTCCAGCTCCCAGGAGGCGAGCGGGTCCCT TTCCTCTTTACCGTCAAGCAACTGGTGGCCTCCGGTAAGCCAGAGAGCTTCAGCGGGGAATTCTTGGTACCATCTTACCGTGGGTCTTCATTCTTGGACC CTAAGGGCAGAGGTGGGTCCCAAGGTTACGACAACGCGGTTGCGCTCCCCGCTGGCGGGAGGGGTGACGAGGAGGAGCTAGCTAAGGAGAACACCAAGAA CGCTGCTTCTTCAAGGGGTAAGATTACTCTGAGCGTGACCAAGAGCAAGCCTGAGACTGGGGAGGTGATTGGTGTTTTTGAGAGCGTTCAGCCTTCGGAT ACTGATTTGGGTGCCAAGGCTCCCAAGGATGTCAAGATTCAAGGGGTTTGGTATGCTCAGCTTGATTGA
AA sequence Show only first row Show all	>Lus10022479 pacid=23171676 polypeptide=Lus10022479 locus=Lus10022479.g ID=Lus10022479.BGIv1.0 annot-version=v1.0 MASSLQAAATLMQPTKVGTFSSSRSSSNAQLKPSARVTCSLHSNFNELAQKCFDATKLAGFALATSALVASGAGAEGPPKRLTFDEIQSKTYMEVKGTGT ANQCPTIDGGSESFAFKAGKYQAKKFCFEPTSFTVKAEGIAKNSAPEFQNTKLMTRLTYTLDEIEGPFEVASDGTVKFEEKDGIDYAAVTVQLPGGERVP FLFTVKQLVASGKPESFSGEFLVPSYRGSSFLDPKGRGGSQGYDNAVALPAGGRGDEEELAKENTKNAASSRGKITLSVTKSKPETGEVIGVFESVQPSD TDLGAKAPKDVKIQGVWYAQLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	0	1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	1.0	0.9832
AT1G76100		PETE1	plastocyanin 1 (.1)		Lus10005628 [exp]	2.4	0.9684
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	2.8	0.9689
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10029823 [exp]	3.9	0.9538
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10039156 [exp]	5.2	0.9375
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	5.3	0.9609
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10001644 [exp]	6.5	0.9496
					Lus10018772 [exp]	6.5	0.9505
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	7.1	0.9347
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10013778 [exp]	8.1	0.9177

Compare expression of checked genes

Lus10022479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.