Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66600 607 / 0 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 460 / 5e-154 Protein of unknown function, DUF547 (.1) AT3G18900 287 / 2e-89 unknown protein AT1G76620 228 / 6e-67 Protein of unknown function, DUF547 (.1) AT1G21060 224 / 6e-66 Protein of unknown function, DUF547 (.1.2) AT1G43020 216 / 3e-63 Protein of unknown function, DUF547 (.1.2.3.4) AT5G47380 217 / 3e-62 Protein of unknown function, DUF547 (.1) AT3G13000 181 / 2e-49 Protein of unknown function, DUF547 (.1.2) AT1G16750 171 / 4e-46 Protein of unknown function, DUF547 (.1) AT4G37080 149 / 5e-38 Protein of unknown function, DUF547 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016786 [exp] 1069 / 0 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10040507 [exp] 226 / 2e-67 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10007795 [exp] 209 / 1e-57 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 182 / 3e-49 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 172 / 1e-45 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10027653 [exp] 167 / 4e-44 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 164 / 3e-43 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10011308 [exp] 157 / 6e-43 AT2G23700 157 / 4e-43 Protein of unknown function, DUF547 (.1) Lus10037293 [exp] 163 / 1e-42 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033100 [exp] 801 / 0 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 796 / 0 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 527 / 0 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 526 / 1e-180 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 303 / 4e-95 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.001G157200 [exp] 220 / 3e-63 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.006G216800 [exp] 180 / 5e-49 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 172 / 1e-45 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.010G202900 [exp] 152 / 2e-39 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 152 / 4e-39 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10022480 pacid=23171694 polypeptide=Lus10022480 locus=Lus10022480.g ID=Lus10022480.BGIv1.0 annot-version=v1.0 ATGGGTTGTGATGAAGATGGGAAAATGGCGGGAGTGCGTGTGGAATGTGGTCACAAGCGTTCTAAGAGCCGTTGGGTGTGGGTGGCAAATGGGAACAGTT TTAGGAAAATGGGTTTTAGGAAAATGTTTGCCAAATGGACCTCTGGTAGAAGCTTCCCAGGCAAAAAGGTAGCGGAAGAAGATGGACCAGATACTTCTCT TGGAGCTTCACTCCGTATCAAGCTTGATATGGGACGCCTGAAAGACTCTGTTAATAGCAAGAGGAAACAATCCCCAAGGGCTGAAACTCAGAGTTCTTTG AAACATGAGCTTGAGAAAAGATTACAAGATCAATTTGGGGTTCGTCGTGCACTGGAGAAGGCATTGGGTTACCGGACTTCCTCCATTGGAGATGTGTCTG ACGAATTAATAATGCCCAAGCCAGCCACAGAATTGATCAAGGAAATAGCAGTGCTAGAGCTTGAAGTCGTATATTTGGAGCAGTACCTCCTTTCCTTGTA CAGAAAAGCATTTGATCAACAAGTATCTTCAGGATCCAAATCCTCTGTAACAACTCCAAGACTCAGGTTCCAGGATGTTCCTAGACCTGATGTCATGTTA ACAAGGGATAGTCAATTTGGCTTCCAGTCACAGGACAATCCATCAAAGGACTCCACCAGTCTTACAGGACAAGAAAAGCTATTAGACTCCAGTGTTCAAC GCTCTCAGTCCTCGTTATCACAATGCTCAGCATTTTCAGCAAGAGTTTCTCCTCCTGCAGATACTTTGGGGAGAGCTGTGCGTTCCTGTCATTCACAGCC TTTGTCCATGATAGAGTTTGCCCAGAATGCAACAAATGTTATCAGCTTGGCAGATCACCTTGGTACACGGATCTCCGATCATGTTCCAGAAACACCTAAC AAGCTTTCCGAGGATATGATTAGGTGCATGTCGGCTATATATTGCAAGCTTTCAGATCCACCAGTGACAAACAAAGGCCTGTCGTCTCCCATATCATCCT TGTCTTCAATGAGTGAATTTTCTCCCCGAGAGCAATGCGATATGTGGAGTCCAGGGTTCAGGAACAATTCATCTTTTGATGTACGGCTAGAGAACCCATT TCTTGTTGAGGGACTGAAAGAGTTCAGTGGACCTTACAGTACAATGGTTGAAGTGCCTTGGATTTACAGGGATAATCAGAAGCTGGGAGATGTTGAGCCC TTGCTGCAGAATTTCAGATCACTCATTTGTAGATTAGAAGGAGTTGACCCAAGGAAGCTCAAACACGAAGAGAAGCTTGCTTTCTGGATCAATGTTCATA ACTCTTTAGTGATGCATGCTTTTCTGGCATACGGTATTCCACAGAACAACGTGAAGAGACTTTTCCTACTTTTGAAGGCTGCTTATAACGTTGGCGGTCA TACGATTAGTGCAGACGCAATCCAGAGTAACATCCTTCAATGCCGAATGTCTCGTCCTGGACAGTGGATCCGATTATTAATCCCTTCAAGATCAAAATTC AAGTCCGGGGATGAAAGACAAGCATACACAATTGATCATCAAGAACCCCTTTTGCATTTTGCACTCAGCTCTGGAAGCCATTCTGACCCTGCGGTGCGAG TCTACACATCGAAAGCAGTATACCAAGAGATGGAAGCAGCAAAAGACGAATACATTCGAGCTACATTTGGAGTACGGAAGGACCAAAGAATCCTACTTCC AAAGATTGTGGAGAGCTTTGGGAAGGATTCAGGTCTAAGTCAAGCTGCTGTGGTTGAAATGATACAAGCATCTCTGCCAGATTGTCTAAGGAAATGTGTG AGGAAATGTCAGCTAGGAAAACCGCGGAAGATGATCGAATGGATGCCACATAACTTCAGTTTCAGGTATCTGATATCAAAAGAGCTGGCTAGGTGA
AA sequence Show only first row Show all	>Lus10022480 pacid=23171694 polypeptide=Lus10022480 locus=Lus10022480.g ID=Lus10022480.BGIv1.0 annot-version=v1.0 MGCDEDGKMAGVRVECGHKRSKSRWVWVANGNSFRKMGFRKMFAKWTSGRSFPGKKVAEEDGPDTSLGASLRIKLDMGRLKDSVNSKRKQSPRAETQSSL KHELEKRLQDQFGVRRALEKALGYRTSSIGDVSDELIMPKPATELIKEIAVLELEVVYLEQYLLSLYRKAFDQQVSSGSKSSVTTPRLRFQDVPRPDVML TRDSQFGFQSQDNPSKDSTSLTGQEKLLDSSVQRSQSSLSQCSAFSARVSPPADTLGRAVRSCHSQPLSMIEFAQNATNVISLADHLGTRISDHVPETPN KLSEDMIRCMSAIYCKLSDPPVTNKGLSSPISSLSSMSEFSPREQCDMWSPGFRNNSSFDVRLENPFLVEGLKEFSGPYSTMVEVPWIYRDNQKLGDVEP LLQNFRSLICRLEGVDPRKLKHEEKLAFWINVHNSLVMHAFLAYGIPQNNVKRLFLLLKAAYNVGGHTISADAIQSNILQCRMSRPGQWIRLLIPSRSKF KSGDERQAYTIDHQEPLLHFALSSGSHSDPAVRVYTSKAVYQEMEAAKDEYIRATFGVRKDQRILLPKIVESFGKDSGLSQAAVVEMIQASLPDCLRKCV RKCQLGKPRKMIEWMPHNFSFRYLISKELAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66600			Protein of unknown function, D...		Lus10022480 [exp]	0	1
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10026200 [exp]	8.8	0.8439
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	14.3	0.7834
					Lus10025897 [exp]	20.3	0.8230
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	24.5	0.7891
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	25.2	0.8270
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	25.7	0.7936
AT3G50620			P-loop containing nucleoside t...		Lus10002971 [exp]	26.3	0.7850
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	31.2	0.8019
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	32.6	0.7860
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	40.7	0.8060

Compare expression of checked genes

Lus10022480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.