Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23740 293 / 5e-90 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016788 [exp] 596 / 0 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033000 [exp] 375 / 3e-119 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 370 / 1e-117 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022482 pacid=23171729 polypeptide=Lus10022482 locus=Lus10022482.g ID=Lus10022482.BGIv1.0 annot-version=v1.0 ATGGAACTTCTTCCTCAGTGTGGTGTTCATGATGGCCGTGAAGGTGATTCTAGTCAACATAATATTGGAGCAGGTAAAAGCCGCGAAGAAGGAAATCAAG TAGAAAATGCCAGTGTTATAGTGAGTGAATCAACGCAAAACCTTGGAGGGTCTCAAGTCATAGGAGAAACTGGAGCTTCAGGAAGTGAGAGAATCTCTTA TGAATATCATGAATTTGATGAAGATGACTCGAGTCTACTGCAGGGCACAAGCGAATCTTATGCAGCTCCTATGAAATCTAATGTGGTTCTACATACTATG GAAATTGAACCAATCAACTCTAGGGAGGGAGATCATTCTTTCTCTGAACCTTTAGCTCTGTGGGTAAAGTGGAGAGGGAAGTGGCAGGCAGGAATCAGAT GTGCAAGAGCTGACTGGCCGCTGTCAACTTTGCGAGCGAAGCCCACTCATGATCGGAAGCAGTACTTCGTCGTATTTTTCCCGAATACCAGAAATTATTC CTGGGCAGATATGCTACTTGTCCGATCGATAAGTGAAACTCCTGAGCCGATTGCATATAAGTCGCACAAAGGTGGACTTAAATTGGTTAAAGATTTGAGC GTTGCACGACGGTTCATAATGCAAAAACTAGCTGTTGGGATGCTGAATATCGTTGATCAATTTCATAATGAGGCTCTGGTAGAATCTGCTCGTTCCGTGC TGGTGTGGAAGGAGTTTGCTATGGAAGCATCACGCTGTAGTGGTTATGGTGATCTCGGAAGAATGCTTCTCAAGCTTCAAAATATGATTTTGCAGAAGTA CATAGAGGCTGATTGGTTGTCCAGTTCTTTTCAATCATGGGTGCAACAGTGTCAGGTTGCATGTAGTGCTGAATCAATCGAGTTGTTGAGAGAGCTACTG CAAGCTAAACGTCTTTTTCGTGAACCAGATTTCAGAAAAGTGTTCTGA
AA sequence Show only first row Show all	>Lus10022482 pacid=23171729 polypeptide=Lus10022482 locus=Lus10022482.g ID=Lus10022482.BGIv1.0 annot-version=v1.0 MELLPQCGVHDGREGDSSQHNIGAGKSREEGNQVENASVIVSESTQNLGGSQVIGETGASGSERISYEYHEFDEDDSSLLQGTSESYAAPMKSNVVLHTM EIEPINSREGDHSFSEPLALWVKWRGKWQAGIRCARADWPLSTLRAKPTHDRKQYFVVFFPNTRNYSWADMLLVRSISETPEPIAYKSHKGGLKLVKDLS VARRFIMQKLAVGMLNIVDQFHNEALVESARSVLVWKEFAMEASRCSGYGDLGRMLLKLQNMILQKYIEADWLSSSFQSWVQQCQVACSAESIELLRELL QAKRLFREPDFRKVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	0	1
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Lus10023486 [exp]	2.0	0.9594
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	3.9	0.9514
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	6.0	0.9541
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	6.6	0.9530
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	7.3	0.9506
AT5G11560			catalytics (.1)		Lus10022143 [exp]	7.5	0.9451
AT3G55160			unknown protein		Lus10007253 [exp]	7.5	0.9536
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015202 [exp]	7.7	0.9370
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	9.8	0.9423
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10011489 [exp]	11.0	0.9430

Compare expression of checked genes

Lus10022482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.